FMO03771.5prime Sequence
1076 bp (1058 high quality bases) assembled on 2008-07-21
> FMO03771.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGGCGCCTG
GTGCGAAATTGGAATTGCCGATTGTTATTTAACGCCAAATCCGGCCAAGA
AATTGTCAGCCATGCCGGAATTCACCAGGAGGCCAAGACCAATGCGATTC
CCAGGGAAAAGAAAGTGATTGAGGCGGACAAGAATGGATACGGGGCCAAA
CATTGCATGAGTCTAGTGGAGAAATACGACTACGAGAACTACCTGTGCAC
CTTGCTCCTACCACGGGAACTGCGACGTGCTGCCTTCGCCCTACGGGCAT
TCAATGTGGAGGTCTCCAGATCGGTTAGCGGCCATCAAATTGAGCCGCAA
ATAGCCAAAATGCGCCTTAAGTTCTGGCACGACTCCATAGACAAGTGCTT
TGAGCCGGATTCCCAAAGATCGTACGTGGAGGACCAGCCTGTCCTGCGCG
AACTGAAGCACACGGTGGGCAGTCGCAAGCTAAATAAGGTATATTTGCGC
CGTCTGGTCACAGCACGGGAACGTCCGCCCACGCATGCATTTGAGTCGAT
ACGCGAGCTGGAGGAGTACACGGAACAGACCTTCTCTTCGCTATTGCTCC
TGCTGTTGGAGGTGGGCGGAGTGCGTGACCTAAATGCTGATCATGCCGCC
TCCCACTTGGGCAAGGCCCAAGGCATCGCCACCCTGCTGCGATCGATACC
GCTGGCAGGACGTCAGCAGGCGCCCTGCATTCCGCTCGAGGTGCTGGTGC
TGCATGGCGTCAGCCAGGAGCGCATCATTCGCTCTAAGAGCGACGACAAG
GGTGTCGAGGACTGTATATTCGATGTGGCCAGTGCCGCCAATACGCACCT
AAAGCTCGCCAGGCAGCTGCACGATAAGGTGCCGCCGCAGTGCGCAAGAT
CTTCCTCTCCGCCGTGGCACGGATGCATATTGGAGCGCCTCCGCCGTGCC
AACTTCCTGCTAACCCACAGAGCTGCGTAGCCGCGACACCTTACTGCCAG
CACGTTATTCTGGAAGTCGCTGCTTAATCGTCGCAAGCTTCTAGACCATT
CGTTGGCGCGCCGGGTCCAGGTTAGT
FMO03771.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sicily-RB | 1385 | CG15738-RB | 307..1304 | 39..1030 | 4840 | 99.4 | Plus |
| sicily-RA | 1110 | CG15738-RA | 32..1029 | 39..1030 | 4840 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11892730..11893356 | 336..959 | 2985 | 99.5 | Plus |
| X | 23542271 | X | 11892038..11892220 | 39..221 | 915 | 100 | Plus |
| X | 23542271 | X | 11892289..11892403 | 221..335 | 575 | 100 | Plus |
| X | 23542271 | X | 11893590..11893664 | 959..1030 | 225 | 96 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:24:31 has no hits.
FMO03771.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:46 Download gff for
FMO03771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sicily-RA | 27..1029 | 31..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:27 Download gff for
FMO03771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15738-RA | 24..1026 | 31..1030 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:02 Download gff for
FMO03771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sicily-RA | 27..1029 | 31..1030 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:02 Download gff for
FMO03771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11892033..11892219 | 31..220 | 97 | -> | Plus |
| X | 11892289..11892403 | 221..335 | 100 | -> | Plus |
| X | 11892730..11893355 | 336..958 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:46 Download gff for
FMO03771.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11786066..11786252 | 31..220 | 97 | -> | Plus |
| arm_X | 11786322..11786436 | 221..335 | 100 | -> | Plus |
| arm_X | 11786763..11787388 | 336..958 | 99 | -> | Plus |
