FMO03777.5prime Sequence
819 bp (819 high quality bases) assembled on 2008-07-21
> FMO03777.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTAAGACG
CACAATGGCGGAATTCGACGTCAAAGCCGGCCTGCAGCACGTGTTGAAGC
GCATAGACGAGGTGCTCCTCCAGCGGCCCAAAGAAGTTCAAGCTGCCAGG
CCGCTGCTCGTTGCTGTAAGCAAAACAAAGCCAGCGGAGGCCGTAATCGA
GGCTTACGAGGGCGGACAAAGAGACTTCGGTGAGAACTATGTACAGGAGC
TGGAGGAGAAGAGCCGCCACCCGGACATTCTGGCCAAGTGCCCCGACATC
AGGTGGCACTTCATAGGCCACATGCAAAGCAACAAGATCAACAAGATCCT
TTCTGTGCCAAATCTGCATATGATCCAGACCGTAGATAGCGAGAAGTTGG
CCACCAAACTGGACGCAGCCTGGTCTAAGCGACAGCCCACCCCTGAGGAG
CCATTGCAGGTGCTCATCCAGATCAACACTAGTGGTGAAGACGTTAAAAG
CGGAATAGAGGCGAAAGATGCTCCTGCACTCTACCAGTACATCAAGAGCA
ACCTTAAACACCTCAACCTGATGGGCATAATGACCATTGGTGCATTTGGT
TTTGACTACAGCAATGGACCCAATCCGGATTTCGTGTCCCTAATGCAGGT
GCACAGATCCATATGTGAGGCGCACTCCTTGGCCCCGGACTCGGTGCTCG
TCTCCATGGGAATGTCCAACGACTTCGACAAGGCGATCGAAATGGGCAGC
ACAGTGGTGCGCGTTGGCTCTTCTATTTTCGGCCATCGGGCGGCCCAGGT
GGCAAGCTTTCTAGACCAT
FMO03777.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1983-RB | 1582 | CG1983-RB | 87..848 | 40..801 | 3795 | 99.9 | Plus |
| CG1983-RA | 1137 | CG1983-RA | 87..848 | 40..801 | 3795 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30176643..30176885 | 735..493 | 1215 | 100 | Minus |
| 3R | 32079331 | 3R | 30177177..30177389 | 345..133 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 30176944..30177093 | 493..344 | 750 | 100 | Minus |
| 2R | 25286936 | 2R | 2083319..2083441 | 493..615 | 510 | 94.3 | Plus |
| 3R | 32079331 | 3R | 30177453..30177546 | 133..40 | 470 | 100 | Minus |
| 3R | 32079331 | 3R | 30176520..30176586 | 801..735 | 320 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:57 has no hits.
FMO03777.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:54 Download gff for
FMO03777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1983-RA | 87..852 | 40..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:00 Download gff for
FMO03777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1983-RA | 59..824 | 40..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:38 Download gff for
FMO03777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1983-RA | 87..852 | 40..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:38 Download gff for
FMO03777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30176516..30176585 | 736..806 | 95 | <- | Minus |
| 3R | 30176643..30176884 | 494..735 | 100 | <- | Minus |
| 3R | 30176944..30177091 | 346..493 | 100 | <- | Minus |
| 3R | 30177177..30177389 | 133..345 | 100 | <- | Minus |
| 3R | 30177454..30177555 | 28..132 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:54 Download gff for
FMO03777.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26002238..26002307 | 736..806 | 95 | <- | Minus |
| arm_3R | 26002365..26002606 | 494..735 | 100 | <- | Minus |
| arm_3R | 26002666..26002813 | 346..493 | 100 | <- | Minus |
| arm_3R | 26002899..26003111 | 133..345 | 100 | <- | Minus |
| arm_3R | 26003176..26003277 | 28..132 | 95 | | Minus |
