FMO03778.5prime Sequence
635 bp (635 high quality bases) assembled on 2008-07-21
> FMO03778.5prime
ATAGCATACCTTATACGAAGTTATCAGTCGACATGGCCGATAACGCAGAA
CCACTGACTTTGTCCAGAGATGTCAAAAGATCGATAGAGCTCTTGGAAAA
GCTGCAAGCGAGTGGCGACTTCCCCACGACAAAACTGGCCGCCCTGCAGA
AGGTGCTCAACTCGGACTTCATGACCTCCGTGCGGGAGGTGTACGAGCAC
GTCTACGAGACGGTGGACATCCAGGGCTCCCACGACGTGAGGGCATCCGC
CACTGCCAAGGCCACTGTGGCAGCCTTCGCAGCCAGCGAGGGGCACGCTC
ATCCCAGAGTCGTCGAGCTCCCGAAAACGGAGGAGGGCTTGGGTTTCAAT
GTAATGGGGGGCAAGGAGCAAAACTCGCCCATCTATATATCCCGAATAAT
ACCTGGAGGCGTGGCTGACAGGCATGGTGGTCTGAAAAGGGGAGATCAAC
TTTTGTCTGTGAATGGTGTGTCTGTCGAAGGAGAAAACCACGAGAAGGCC
GTAGAGCTATTAAAGCAAGCTGTCGGATCTGTAAAGCTGGTGGTACGCTA
CACACCAAAGGTTCTCGAGGAAATGGAAATGCGATTTGATAAGCAACGCA
ACACACGTCGTCGCCAAGCAAGCTTTCTAGACCAT
FMO03778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| veli-RA | 894 | CG7662-RA | 78..662 | 33..617 | 2925 | 100 | Plus |
| veli-RC | 1047 | CG7662-RC | 78..382 | 33..337 | 1525 | 100 | Plus |
| veli-RC | 1047 | CG7662-RC | 534..815 | 336..617 | 1410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25065147..25065416 | 337..68 | 1350 | 100 | Minus |
| 3R | 32079331 | 3R | 25064650..25064797 | 617..470 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 25064861..25064995 | 470..336 | 675 | 100 | Minus |
| 3R | 32079331 | 3R | 25065478..25065514 | 69..33 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:08 has no hits.
FMO03778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:35 Download gff for
FMO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veli-RA | 71..666 | 25..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:34 Download gff for
FMO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veli-RA | 76..671 | 25..622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:22 Download gff for
FMO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| veli-RA | 71..666 | 25..622 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:22 Download gff for
FMO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25064861..25064994 | 337..470 | 100 | <- | Minus |
| 3R | 25065148..25065414 | 70..336 | 100 | <- | Minus |
| 3R | 25065478..25065521 | 25..69 | 93 | | Minus |
| 3R | 25064646..25064796 | 471..622 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:35 Download gff for
FMO03778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20890368..20890518 | 471..622 | 98 | <- | Minus |
| arm_3R | 20890583..20890716 | 337..470 | 100 | <- | Minus |
| arm_3R | 20890870..20891136 | 70..336 | 100 | <- | Minus |
| arm_3R | 20891200..20891243 | 25..69 | 93 | | Minus |
