FMO03784.5prime Sequence
661 bp (661 high quality bases) assembled on 2008-07-21
> FMO03784.5prime
AACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTACGA
CACCAAAATCGAGCGAAGATTTGCTGGGCGAATCTTGGATCGAACTCAGC
ACAACAGCTGCGATGGCTGGCATCAAGAGCCCCGACAGAATCACTCCGTT
GCCATTCAACAATGGCGAGGAGTACCTGAGACTTCTGCGCGAGGCCCAGC
GCGAGTCGAACCAGTCGAGCCGTGTCGTCTCCTTGGCCAGCTCCCGTCGT
GATACGCCCCGTGATAGCCCCAAGAGTCCACCGAACAGTCCCCAGTCGGA
GCTCTGTCCGGATGATGAGCTCAGAAACGTGTACATCAACTACTGGACCA
AGGGAGGAGACAAACAGAATGCAGGCAATGAAGATTGGCTGAAGAACTGG
AATCAGCCACCCAGTAGCTGGAACATTGAGGATTCAAGTCGGGATGCCGG
CGACGAGGGCGAGAAAAAGAAGACTAACACAGGCTACTCCATCCGTTTGA
AGCGACTGGGCTCCAACTCGTTGTTCTCCCGCGAAATTCTGTACTCGCTG
CTGGTGACCAACGTCCTGTCCCTGCTGCTGGGAGCTGGATTCGGGCTATG
GTTGAGCAAGCGTGGCATACTCCTTACCCGTGTGGTCATTGACGCAAGCT
TTCTAGACCAT
FMO03784.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5059-RA | 1725 | CG5059-RA | 387..989 | 41..643 | 3015 | 100 | Plus |
| CG5059-RE | 1543 | CG5059-RE | 244..806 | 81..643 | 2815 | 100 | Plus |
| CG5059-RD | 1477 | CG5059-RD | 178..740 | 81..643 | 2815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20515853..20516133 | 360..80 | 1375 | 99.3 | Minus |
| 3L | 28110227 | 3L | 20515443..20515626 | 595..412 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 20515725..20515788 | 414..351 | 320 | 100 | Minus |
| 3L | 28110227 | 3L | 20515335..20515384 | 643..594 | 250 | 100 | Minus |
| 3L | 28110227 | 3L | 20518968..20519007 | 80..41 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:29 has no hits.
FMO03784.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:39 Download gff for
FMO03784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 387..995 | 41..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:00 Download gff for
FMO03784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 426..1034 | 41..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:45 Download gff for
FMO03784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5059-RA | 387..995 | 41..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:45 Download gff for
FMO03784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20515329..20515383 | 595..648 | 96 | <- | Minus |
| 3L | 20515444..20515623 | 415..594 | 100 | <- | Minus |
| 3L | 20515725..20515786 | 353..414 | 100 | <- | Minus |
| 3L | 20515861..20516132 | 81..352 | 100 | <- | Minus |
| 3L | 20518968..20519007 | 41..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:39 Download gff for
FMO03784.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20508429..20508483 | 595..648 | 96 | <- | Minus |
| arm_3L | 20508544..20508723 | 415..594 | 100 | <- | Minus |
| arm_3L | 20508825..20508886 | 353..414 | 100 | <- | Minus |
| arm_3L | 20508961..20509232 | 81..352 | 100 | <- | Minus |
| arm_3L | 20512068..20512107 | 41..80 | 100 | | Minus |
