Clone FMO03788 Report

Search the DGRC for FMO03788

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:37
Well:88
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5500-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03788.5prime Sequence

555 bp (555 high quality bases) assembled on 2008-07-21

> FMO03788.5prime
TCGTATAGCATACATTAAACGAAGTTATCAGTCGACATGTTGGCTCCCCT
GGGCTTCAGCTGTCCGCGATGCTTGCTCCTGCGACGTGGCGCCGAGCGTT
GGGCCTCACTGGCCCGCCAATTGTCGGGCAGCAGCTCCCAGGATGATGCC
AGCAGCAAGGATGCGGCCGCCCAGGAGGCAGCAAGTGGCTGTCCGCCCAA
TAGCACAACGACGGGCACTGACACTCCCAAAGCCAAAGATAAAACCACCA
AGGGAAGGAAGCGGCTCAGAAACATAGAGATACCTCCCGAGCCCACCACC
TGCTGCATGTCGGGCTGCGCCAACTGCGTTTGGCTGGACTACGCACAGAC
GCTGGCCAAGCTGCTGGGCGACAACGATGAGGAGGCGCGAGAGATTGTGC
TGAGCAAGATCACCGACCCGAACCTGAAGATGTTCCTCAGCCTGGAGCTG
CGCCAGATGGCTAAGCAGCGGGAGGAGAAGGCGGCGGCGGAGAAAGCAGC
GAAGCAGGGAAAGCCAAAGAAATCCTCGCCCCCGCCGGCAAGCTTTCTAG
ACCAT

FMO03788.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5500-RA 859 CG5500-RA 242..742 37..537 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26880083..26880342 278..537 1300 100 Plus
3R 32079331 3R 26879594..26879836 37..279 1215 100 Plus
Blast to na_te.dros performed on 2014-11-28 22:14:37 has no hits.

FMO03788.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:23 Download gff for FMO03788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5500-RA 231..742 27..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:08 Download gff for FMO03788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5500-RA 228..739 27..537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:07 Download gff for FMO03788.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5500-RA 231..742 27..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:07 Download gff for FMO03788.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26879583..26879836 27..279 98 -> Plus
3R 26880085..26880342 280..537 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:23 Download gff for FMO03788.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22705305..22705558 27..279 98 -> Plus
arm_3R 22705807..22706064 280..537 100   Plus