FMO03789.5prime Sequence
559 bp (559 high quality bases) assembled on 2008-07-21
> FMO03789.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGGTGGGCAGTT
CAATTATGGAGACCGTCGCTATTTTGGCCCTGCTGCTTGGCCTGTTCATT
CGAAGTGGCTACTGCATAGACTGTTTCAAATGCGTGTCATACAATGGTGC
TAACAAGGCCTGCGACGATCCCTTTCACAACAACTACTCAACGGCCATTT
TGGAGTCGCCCTGCATGGGCGGCCGGAAGGGGCGTGACGGCCTGTTTCCG
GCCACCGCTTGCATCAAGATCGCCGGCTATTACGATGGAACTGGCGAGAC
GATAACGGTGAGAGGTTGCGCCCTGGACAGCGGCACCCTGACCACCGACA
CAGAGATTATAAGAATGTCGCATTGCGGAAAGTTCTACTACGATGACAAG
TACGTGCACGGGTGCTTGCAGAGCTGCAGCGATGCGGATGCCTGCAACTC
GGCCAGGAGGCAGGGCGCAAGTCCCGCAGACCTGGAGTCACTGATGAGGC
ACCTGCTCAGTCTGGTCGTGTTCCTATTGGCTGCCAGCAGGGCAAGCTTT
CTAGACCAT
FMO03789.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31323-RB | 1033 | CG31323-RB | 162..668 | 35..541 | 2535 | 100 | Plus |
| CG31323-RA | 3489 | CG31323-RA | 285..791 | 35..541 | 2535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26184044..26184221 | 107..284 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 26184468..26184609 | 400..541 | 710 | 100 | Plus |
| 3R | 32079331 | 3R | 26184289..26184407 | 284..402 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 26183892..26183965 | 35..108 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:25:31 has no hits.
FMO03789.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:20 Download gff for
FMO03789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31323-RA | 279..795 | 27..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:17 Download gff for
FMO03789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31323-RA | 277..793 | 27..547 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:51 Download gff for
FMO03789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31323-RA | 279..795 | 27..547 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:51 Download gff for
FMO03789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26183889..26183964 | 30..107 | 96 | -> | Plus |
| 3R | 26184045..26184221 | 108..284 | 100 | -> | Plus |
| 3R | 26184290..26184404 | 285..399 | 100 | -> | Plus |
| 3R | 26184468..26184613 | 400..547 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:20 Download gff for
FMO03789.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22009611..22009686 | 30..107 | 96 | -> | Plus |
| arm_3R | 22009767..22009943 | 108..284 | 100 | -> | Plus |
| arm_3R | 22010012..22010126 | 285..399 | 100 | -> | Plus |
| arm_3R | 22010190..22010335 | 400..547 | 97 | | Plus |
