FMO03790.5prime Sequence
453 bp (453 high quality bases) assembled on 2008-07-21
> FMO03790.5prime
TTCGTATAGCATAATTATACGAAGTTATCAGTCGACATGGAGCCCATATC
ACATCTGGTGAAGTCCTCGCTGCCCAATTACTTGTCAAGTCTGCCGGTTC
CCGACAGCATCGGCGGCTGGTTTAAGCTCTCCTTCAAGGATTGGTTGGCC
CTGATCCCACCCACCGTGGTGGTGGCCGGACTCGGCTACACCGCCTACCT
GGCCTACTGTCCGGCGGCACGGGCCAGCTGCGCGGCCAAAAACAGCGGAC
GCTGCAACAACCACATCCGCAAGAACGAGCCCAAGGTGGTGGACATGATC
GACGTGGAGGATATTGCGGAGAAGGCGGCCTTCTGTCGCTGCTGGAAGAC
CAAGAACTGGCCCTACTGCGATGGCAGTCATGGCGAGCACAACAAGCAGA
CTGGAGACAACGTCGGACCAATTGTCATCAAGAAGGCAAGCTTTCTAGAC
CAT
FMO03790.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cisd2-RA | 675 | CG1458-RA | 85..488 | 32..435 | 2005 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29222546..29222769 | 357..134 | 1120 | 100 | Minus |
| 3R | 32079331 | 3R | 29223243..29223344 | 133..32 | 495 | 99 | Minus |
| 3R | 32079331 | 3R | 29222404..29222481 | 435..358 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:41 has no hits.
FMO03790.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:42 Download gff for
FMO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1458-RA | 85..494 | 32..443 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:35 Download gff for
FMO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1458-RA | 84..493 | 32..443 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:39 Download gff for
FMO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cisd2-RA | 85..494 | 32..443 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:39 Download gff for
FMO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29222398..29222481 | 358..443 | 95 | <- | Minus |
| 3R | 29222546..29222769 | 134..357 | 100 | <- | Minus |
| 3R | 29223243..29223344 | 32..133 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:42 Download gff for
FMO03790.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25048120..25048203 | 358..443 | 95 | <- | Minus |
| arm_3R | 25048268..25048491 | 134..357 | 100 | <- | Minus |
| arm_3R | 25048965..25049066 | 32..133 | 99 | | Minus |
