FMO03791.5prime Sequence
505 bp (505 high quality bases) assembled on 2008-07-21
> FMO03791.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCACGAGGT
GGTATCCCATCTATCAGCGCGGCAATCCGCAGCTTCGCGTTTTCCTTCCC
AACTTCTGGATGAAGCTAATCCGACCCACGGAGGAACAGCCACCCAATGT
GGTCACTTTTTCGGTGTCCATGGAAATGACCAAGTACGATGTGCGTAACT
ATCTGGAGAAGATCTACAAGCTGCCGGTGGTGGATGTGCGTACTCGGATT
GCCATGGGCGAGACCAAGAAGGATCAGACCTACGGCTACATCACCAAAAA
AGACGACGTGAAGCTGGCTTATGTAACATTGCCCAGGGAGGAGTCCTTTG
TCTTCCCCGACTTCTTTTCCGAAAAGGCTGAGAAGCAGGCCAAGGAGGAA
AAGTCGCTGGATGAATCGAAAGCCGGTTTCCGCAGATTTCTGGACAGGAA
CAAGAAGCGACCCGGCACGCCGGGCTGGTTTTCCATTGCAAGCTTTCTAG
ACCAT
FMO03791.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL23-RD | 591 | CG1320-RD | 73..523 | 37..487 | 2255 | 100 | Plus |
| mRpL23-RC | 560 | CG1320-RC | 42..492 | 37..487 | 2255 | 100 | Plus |
| mRpL23-RB | 622 | CG1320-RB | 104..554 | 37..487 | 2255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2373129..2373423 | 331..37 | 1475 | 100 | Minus |
| 3L | 28110227 | 3L | 2372912..2373068 | 487..331 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:56 has no hits.
FMO03791.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:33 Download gff for
FMO03791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL23-RB | 104..560 | 37..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:58 Download gff for
FMO03791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL23-RA | 77..533 | 37..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:23 Download gff for
FMO03791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL23-RB | 104..560 | 37..496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:23 Download gff for
FMO03791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2372905..2373067 | 332..496 | 97 | <- | Minus |
| 3L | 2373129..2373423 | 37..331 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:33 Download gff for
FMO03791.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2372905..2373067 | 332..496 | 97 | <- | Minus |
| arm_3L | 2373129..2373423 | 37..331 | 100 | | Minus |
