FMO03792.5prime Sequence
1086 bp (1075 high quality bases) assembled on 2008-07-21
> FMO03792.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGAACACT
TATTTCGATGAGTATGAAAACTTGGAGATCCACGAGCTCATGCTGAAGGA
TCGTCCTCGGCAAGAAGCCTACTACAATGCGATATTGGGGAATAAGGATC
TGTTCAAGGACAAGATCGTAATGGATGTTGGTGCCGGCACAGGGATTCTG
TCCGCCTTTTGTGCGAAAGCAGGAGCCCGTTTGGTCTACGCCGTAGAAGC
ATCCAATGTGGCCACCAAAGTTGCGCTGGATTTGATTGAGGATAACGGCC
TGACGAACGTGGTGAAGGTGATCCAGTCGCGTGTTGAGGAATTCGTACTG
CCTGCCGAGGCGGAAAAGGTGGACATCATTGTGTCCGAGTGGATGGGCTT
CTACCTGCTGCACGAGGGCATGTTGGACTCGGTTCTCCTGGCCCGGGACA
AGTTCCTCAAGGAGGGTGGACTCCTGTTCCCCAGCGAGTGCACAATTTTC
GTGGCACCCTGCTCGGTACCATCGCTCTTCGATGATTGGCACAACGTGGA
CGGCATCAAAATGGACACGTTTGCCAGAAAACTCAGAACCCAAAAGTCAT
CCCGACCGGAGATTACACAGCTGAATCCGCAAGATCTTCTGCACGAGGGC
GTCGTCTTTCACTGGATGAATCTGCTGGATGTGGAAGCCAGCGATTTGGA
CAGCATTCAGTTCAAGGAGGTAATAACAGCCCAGAAGGCGGGCAATCACC
AGGGCTTCTGCATTTGGTTCGATGTACAGTTTCCTGGCGAAGATTTTGTT
CTAAGCACATCGCCGCTATCCCCGCCAACGCATTGGAAGCAGTGTGTAGT
CGTCCTGCCCCGAGGAATCCTGCGAAAATCTGGAGGAGAAGTCACCCATT
GCATTTCAAATCACAATGAAGCGCAGTGCTGCCGATATGCGTAAATACAA
TCTGGAGGTGGATTTGCTAGACCCCAACCACAGAGGAGCATCCAGTGCCT
TGCTCCTGTCACATGACGAAGTGCATTCTGACGGGAGCCTCATCTAAAAT
GATGGAACACCTCAGCAGGCTTTCTAGAACCATTCG
FMO03792.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art8-RA | 1210 | CG16840-RA | 94..1117 | 38..1064 | 5000 | 99.4 | Plus |
| Nup154-RD | 5420 | CG4579-RD | 4413..5398 | 1064..76 | 4810 | 99.4 | Minus |
| Nup154-RC | 4612 | CG4579-RC | 4346..4612 | 1064..795 | 1215 | 97.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11009929..11010899 | 1049..76 | 4705 | 99.6 | Minus |
| 2L | 23513712 | 2L | 11010954..11010993 | 77..38 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:55:50 has no hits.
FMO03792.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:29 Download gff for
FMO03792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 94..1123 | 38..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:25 Download gff for
FMO03792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 93..1122 | 38..1072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:31 Download gff for
FMO03792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art8-RA | 94..1123 | 38..1072 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:31 Download gff for
FMO03792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11009908..11010897 | 78..1072 | 98 | <- | Minus |
| 2L | 11010954..11010993 | 38..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:29 Download gff for
FMO03792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11009908..11010897 | 78..1072 | 98 | <- | Minus |
| arm_2L | 11010954..11010993 | 38..77 | 100 | | Minus |
