FMO03794.5prime Sequence
1033 bp (1033 high quality bases) assembled on 2008-07-21
> FMO03794.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGACCAAACCGAC
GCGCGAACACTGTTCCCTGGCCCTGCTGGCGCTTCTCGTCGCCCCGTTCG
TGGTGCTCGGTGAGGATATGCCCAGGGAGCCGGACTACATGAAGCGGGAG
CACAGTTTGGTGCGTCCATTCCAAGGCGTAGGCGTGATCCTGCCACACTG
GGACTTCCTGGGTAACACGATGGTGACCAGCAACTATATAAGACTGACGC
CGGACTTACAGTCCAAGAGCGGTGCACTTTGGAACTACTCGCCCGTGATG
ACTCGCAATTGGGAAGTGCACGTTGGCTTTAAGGTGCACGGCAAGGGAAC
TGAACTGTTCGGCGACGGATTTGCCATTTGGTACACAAAGGAGCGCATGC
AAACCGGGCCGGTCTTTGGCAGCAAGGATCACTTCTCCGGACTGGCCATC
ATTCTGGACACCTATAGCAATCACAATGGTCCACACAACCACCAACATCC
ATATCTCAGCGCCATGGTGAACAATGGCAGCTGGAGCTACGACCACGATC
GCGATGGAACGCACACTCAGCTGGCCGGCTGCGAAGTTCGTTTCCGCAAT
GTGGAGTACGAGACGCTGGTTAGCATTCGATACGAAAACGACATTCTGTC
GGTTTCCACAGATCTGGAGAACCGCAACGAATGGAAGAACTGCTTTGTAG
TGGCCAACGTTGAGCTACCCACGGGCTACCACTTCGGCATGTCTGCGACG
ACGGGTGATCTGTCCGACAATCACGATATTCACAGTTTCAAGTTCTATGA
CCTGGACTTGAACGTAAATCACGATGAGATTATCCGGCGCTCCAATATCA
TACCGAATGCCAGACATTCGAGCCCCCGCGCGAGCAAAAGAAGATCCCAA
GCCGGGAATGTCCAACGCCCAGATCTTCTTCATCCTTCTCTTCGTGGTGT
CGTGCGGCTGCAGTGTCCATCTTCGCATCTCCTACTTCAAGGATCGCAAC
GCGCGAAAACGTTTCTACGCAGCTTTCTAGACA
FMO03794.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5510-RA | 1362 | CG5510-RA | 109..1108 | 36..1030 | 4800 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24168474..24168803 | 819..490 | 1650 | 100 | Minus |
| 3R | 32079331 | 3R | 24168857..24169055 | 489..291 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 24167929..24168144 | 1030..820 | 755 | 95.4 | Minus |
| 3R | 32079331 | 3R | 24169314..24169454 | 176..36 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 24169131..24169248 | 291..174 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:09 has no hits.
FMO03794.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:12 Download gff for
FMO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5510-RA | 105..1109 | 29..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:33:39 Download gff for
FMO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5510-RA | 104..1108 | 29..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:20:31 Download gff for
FMO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5510-RA | 105..1109 | 29..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:20:31 Download gff for
FMO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24169131..24169246 | 176..291 | 100 | <- | Minus |
| 3R | 24169315..24169458 | 29..175 | 97 | | Minus |
| 3R | 24167928..24168144 | 820..1032 | 94 | <- | Minus |
| 3R | 24168474..24168803 | 490..819 | 100 | <- | Minus |
| 3R | 24168857..24169054 | 292..489 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:12 Download gff for
FMO03794.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19993650..19993866 | 820..1032 | 94 | <- | Minus |
| arm_3R | 19994196..19994525 | 490..819 | 100 | <- | Minus |
| arm_3R | 19994579..19994776 | 292..489 | 100 | <- | Minus |
| arm_3R | 19994853..19994968 | 176..291 | 100 | <- | Minus |
| arm_3R | 19995037..19995180 | 29..175 | 97 | | Minus |
