FMO03796.5prime Sequence
1140 bp (1004 high quality bases) assembled on 2008-07-21
> FMO03796.5prime
TCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAGAGTGTTCAT
AGCTCTAGCGGCTTTGTTGGCAACAGTAAGTGCTCTTCCCATTGAGGAAC
GTGTCAATGGTGAAAATGGTTGGTATGTGCCTCAGATAGACGGCAGTTTC
GAGTGGATGGACAAACAGGATGCCGAGGAGCTCTTAAATAGAAATTCACT
CATCGAAACACGTTCCAATGACGTGTCCTTTTACCTGTACACCAAACATA
ACCCAACCGTGGGAAAGGAAATCAGGGCTGATGCTTCATCAATCGAAGAC
TCTCATTTCGATAAGAACCAGGGTACTCGTTTCGTAATCCACGGGTGGAA
TGGTCGCTACACTGATGGCATGAACGTCAAGATCACCCGAGCCTGGCTTT
CGAAGGGAGACTACAACGTGATCGTTGTTAACTGGGATCGTGCCCAGTCC
GTGGACTATATCTCATCGGTGCGAGCTGTTCCTGGAGCTGGAGCCAAAGT
GGGAGAAATGATTGAATATCTGCATGAACACCATCATTTGTCCATGGAGA
GCCTGGAAGTAATCGGACACAGTTTGGGTGCCCATGTGGCTGGCTATGCT
GGAAAGCAGGTGGGCGGCAAAAGGGTTCACACGATTGTCGGTCTGGATCC
TGCCATGCCTCTTTTTGCCTACGATAAGCCTGACAAGCGACTGTCCACCG
AAGATGCCTTCTATGTCGAGTCTATTCAGACCAATGGGGGTGAAAAGGGT
TTCCTAAAACCCATTGGCAAAGGCACTTTCTATCCGAATGGAGGAAGAAA
TCAACCAGGTTGCGGTTCAGACATCGGAGGAACCTGCGCCCACGGACGAT
CCGTAACGTATTACGTGGAGGCAGTCACTGAGGATAACTTTTGGAACGAT
CAAGTGTTCACGACTACCAGGCTGCGTTGGGCCACGAGTGCGGAAGCACC
TACAGTGAGTTCGCATGGGAGCTGTTACCAACGCCTACATGGTCGACGGT
GACTTCTATGTGCCCGGTAAACGGAACAGGCCCTTTCGGAAAGAATCGAA
GCCAGCCTTTTCTTAGAACATTCGTTTGGCCGGCGGTCCAGGTAGTTGTT
CATAATCCCATAATCAGTAATCTATCCATAACCACAACTA
FMO03796.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17191-RA | 1090 | CG17191-RA | 25..1035 | 37..1050 | 4860 | 99 | Plus |
| CG17192-RA | 1052 | CG17192-RA | 50..982 | 81..1014 | 1375 | 77.1 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 386..1010 | 391..1016 | 790 | 75.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27018668..27019635 | 1044..75 | 4550 | 98.9 | Minus |
| 3R | 32079331 | 3R | 27017250..27018182 | 1014..81 | 1285 | 76.6 | Minus |
| 3R | 32079331 | 3R | 27020311..27020935 | 1016..391 | 705 | 75.3 | Minus |
| 3R | 32079331 | 3R | 27025028..27025472 | 1016..568 | 385 | 74.4 | Minus |
| 3R | 32079331 | 3R | 27022135..27022579 | 1016..568 | 325 | 73.6 | Minus |
| 3R | 32079331 | 3R | 27021153..27021257 | 179..75 | 210 | 80 | Minus |
| 3R | 32079331 | 3R | 27019688..27019727 | 76..37 | 200 | 100 | Minus |
| 3R | 32079331 | 3R | 27025581..27025637 | 459..403 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:04 has no hits.
FMO03796.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:14 Download gff for
FMO03796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 17..1038 | 27..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:17:40 Download gff for
FMO03796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 17..1038 | 27..1055 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:16 Download gff for
FMO03796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17191-RA | 17..1038 | 27..1055 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:16 Download gff for
FMO03796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27018658..27019633 | 77..1055 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:14 Download gff for
FMO03796.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22844380..22845355 | 77..1055 | 98 | <- | Minus |
