FMO03801.5prime Sequence
622 bp (622 high quality bases) assembled on 2008-07-21
> FMO03801.5prime
CCCCTTTTACGAAGTTATCAGTCGACATGTCGAAACCAATTACCTTTGTC
ACCGGCAACGCCAAGAAGCTGGAAGAGTTGGTTGCCATCCTGGGACCCAG
TTTCCCGCGCACCATTGTGTCAAAGAAGATTGATCTTCCGGAATTGCAAG
GCGACATCGACGAGATTGCCATCAAGAAGTGCAAGGAGGCAGCGCGTCAG
GTGAATGGACCCGTGCTGGTGGAGGACACTAGTCTGTGCTTCAATGCGCT
GGAGGGCTTGCCGGGTCCGTACATCAAATGGTTCCTGGAGAAGCTGCAGC
CGGAGGGGTTACACCGTCTGCTCCATGGTTGGGAGAACAAAAGCGCTCAG
GCTATTTGCACCTTTGGCTACTGCGACGGTGTGGATGCCGAGCCTCTAAT
CTTTAAGGGCATCACCGAGGGCGTTATCGTCGAACCTCGCGGCCCCCGGG
ACTTTGGATGGGATCCGGTTTTCCAGCCCAGTGGCTACGATAAGACCTGC
GCCGAACTGCCCAAGTCCGAGAAGAACACCATTTCCCATCGCTACCGCGC
TTTAGCTCTACTGCGGCAGCACTTCGAGAAACAGGACAAGTTAATAAACG
CAAGCTTTCTAGACCATTCGTC
FMO03801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8891-RA | 769 | CG8891-RA | 111..684 | 26..599 | 2855 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4978775..4979087 | 461..149 | 1565 | 100 | Minus |
| 2L | 23513712 | 2L | 4978569..4978708 | 599..460 | 685 | 99.3 | Minus |
| 2L | 23513712 | 2L | 4979144..4979269 | 151..26 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:31:08 has no hits.
FMO03801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:30 Download gff for
FMO03801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8891-RA | 100..684 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:26 Download gff for
FMO03801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8891-RA | 98..682 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:56 Download gff for
FMO03801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8891-RA | 100..684 | 17..599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:56 Download gff for
FMO03801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4979145..4979280 | 17..150 | 97 | | Minus |
| 2L | 4978569..4978707 | 461..599 | 99 | <- | Minus |
| 2L | 4978776..4979085 | 151..460 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:30 Download gff for
FMO03801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4978569..4978707 | 461..599 | 99 | <- | Minus |
| arm_2L | 4978776..4979085 | 151..460 | 100 | <- | Minus |
| arm_2L | 4979145..4979280 | 17..150 | 97 | | Minus |
