FMO03802.5prime Sequence
464 bp (464 high quality bases) assembled on 2008-07-21
> FMO03802.5prime
CTAATAAGAAGTTATCAGTCGACATGTTCAAATCCGCCGTTGTTATTCTG
GCTATCGTTGCCTGCGCTGCTGCCAAGCCTGGACTTCTGGGTGCTCCCCT
TGCTTACACTGCTCCTCTGGCTTACTCTGCTCCTCTGGCTTACTCAGCTC
CTGCTGCCGTGGTAGCTGCTCCCGCTCCAGTTGTGACCGCCACCAGTAGC
CAGGTTATCGCCAGGAACTACAATGGAATCGCCGCTGCTCCTGTGATTGC
TCCCGTTGCCGCTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCCG
CTCCTGTGGTGGCCAAGTACGCTGCTGCTCCATTGGCTGCTCCTGTTGTG
GCCAAGTACGCTGCTGCTCCATTGGCCCACATTTCCTCCTTGGCTTACAC
CTCGCCTTTGGCATACAGTGCCTTGCCATCAGCTCCTGTTCTTCTTGCAA
GCTTTCTAGACCAT
FMO03802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18294-RA | 507 | CG18294-RA | 55..477 | 24..446 | 2115 | 100 | Plus |
| CG12519-RB | 600 | CG12519-RB | 53..360 | 24..331 | 1480 | 98.7 | Plus |
| CG12519-RA | 507 | CG12519-RA | 53..360 | 24..331 | 1480 | 98.7 | Plus |
| CG18294-RA | 507 | CG18294-RA | 279..368 | 287..376 | 375 | 94.4 | Plus |
| CG18294-RA | 507 | CG18294-RA | 318..407 | 248..337 | 375 | 94.4 | Plus |
| CG12519-RB | 600 | CG12519-RB | 277..360 | 287..370 | 315 | 91.7 | Plus |
| CG18294-RA | 507 | CG18294-RA | 279..330 | 326..377 | 185 | 90.4 | Plus |
| CG18294-RA | 507 | CG18294-RA | 357..408 | 248..299 | 185 | 90.4 | Plus |
| CG12519-RB | 600 | CG12519-RB | 277..327 | 326..376 | 180 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19475047..19475457 | 446..36 | 2055 | 100 | Minus |
| 3L | 28110227 | 3L | 19472610..19472905 | 36..331 | 1420 | 98.6 | Plus |
| 3L | 28110227 | 3L | 19466699..19466962 | 299..36 | 1260 | 98.5 | Minus |
| 3L | 28110227 | 3L | 19471808..19472096 | 340..46 | 745 | 84.4 | Minus |
| 3L | 28110227 | 3L | 19475971..19476259 | 46..340 | 745 | 84.4 | Plus |
| 3L | 28110227 | 3L | 19478373..19478568 | 56..251 | 740 | 91.8 | Plus |
| 3L | 28110227 | 3L | 19423849..19424044 | 56..251 | 725 | 91.3 | Plus |
| 3L | 28110227 | 3L | 19467481..19467687 | 46..270 | 700 | 88.4 | Plus |
| 3L | 28110227 | 3L | 19488045..19488279 | 56..299 | 615 | 84.4 | Plus |
| 3L | 28110227 | 3L | 19475117..19475206 | 337..248 | 375 | 94.4 | Minus |
| 3L | 28110227 | 3L | 19475156..19475245 | 376..287 | 375 | 94.4 | Minus |
| 3L | 28110227 | 3L | 19423125..19423224 | 253..154 | 320 | 88 | Minus |
| 3L | 28110227 | 3L | 19472822..19472905 | 287..370 | 315 | 91.7 | Plus |
| 3L | 28110227 | 3L | 19424757..19424836 | 166..245 | 310 | 92.5 | Plus |
| 3L | 28110227 | 3L | 19471817..19471903 | 370..284 | 255 | 86.2 | Minus |
| 3L | 28110227 | 3L | 19476164..19476250 | 284..370 | 255 | 86.2 | Plus |
| 3L | 28110227 | 3L | 19464433..19464518 | 250..165 | 220 | 83.7 | Minus |
| 3L | 28110227 | 3L | 19475116..19475167 | 299..248 | 185 | 90.4 | Minus |
| 3L | 28110227 | 3L | 19475194..19475245 | 377..326 | 185 | 90.4 | Minus |
| 3L | 28110227 | 3L | 19472822..19472872 | 326..376 | 180 | 90.2 | Plus |
Blast to na_te.dros performed 2014-11-28 20:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2777..2849 | 184..109 | 147 | 69.7 | Minus |
FMO03802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:34 Download gff for
FMO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18294-RA | 49..488 | 14..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:28 Download gff for
FMO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18294-RA | 45..484 | 14..455 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:48 Download gff for
FMO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18294-RA | 49..488 | 14..455 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:48 Download gff for
FMO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19475036..19475457 | 36..455 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:34 Download gff for
FMO03802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19468136..19468557 | 36..455 | 99 | <- | Minus |
