FMO03803.5prime Sequence
559 bp (559 high quality bases) assembled on 2008-07-21
> FMO03803.5prime
TAACTTCGTATAGCATACAAAGGCAAAGTTATCAGTCGACATGATGGTTG
AGTCCGATGGAACCGCCGACGCCACCCGCCGCCTAAACGTGAAGAAGCAA
ACACTGGACGATGCGTACGCCGTGCCCGCCAACTTCCTGGAGATCGACGT
GGTCAATCCGCTGACCACCATGGCGGCGGGCAAGAAGCGCTACACGGACT
ACGAGGTCCGGATGCGGACCAATCTGCCCGTCTTTAAGGTAAAGGAGTCC
AGTGTCAGGCGACGCTACAGCGACTTTGAGTGGCTGCGAAACGAGCTGGA
GCGGGATAGCAAGATTGTGGTGCCACCACTCCCAGGAAAGGCATGGAAGC
GGCAGATGCCCTTCCGCGGCGACGAGGGCATCTTTGACGAAAGCTTCATC
GAGGAGCGGCGCAAGGGACTGGAGGCCTTCATCAACAAGATAGCCGGACA
TCCGCTGGCGCAGAACGAGCGCTGCCTGCATATGTTCCTGCAGGAGAATG
TCATAGATAAGAACTACGTGCCCGGCAAGATTCGGAACACAGCAAGCTTT
CTAGACCAT
FMO03803.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snx3-RB | 1860 | CG6359-RB | 314..814 | 41..541 | 2505 | 100 | Plus |
| Snx3-RA | 1426 | CG6359-RA | 314..814 | 41..541 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12629220..12629449 | 312..541 | 1150 | 100 | Plus |
| 3R | 32079331 | 3R | 12628344..12628520 | 41..217 | 885 | 100 | Plus |
| 3R | 32079331 | 3R | 12628888..12628984 | 217..313 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:09:56 has no hits.
FMO03803.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:51 Download gff for
FMO03803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx3-RA | 307..823 | 33..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:10 Download gff for
FMO03803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6359-RA | 297..813 | 33..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:46 Download gff for
FMO03803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snx3-RA | 307..823 | 33..552 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:46 Download gff for
FMO03803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12628337..12628520 | 33..217 | 97 | -> | Plus |
| 3R | 12628889..12628984 | 218..313 | 100 | -> | Plus |
| 3R | 12629222..12629458 | 314..552 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:51 Download gff for
FMO03803.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8454611..8454706 | 218..313 | 100 | -> | Plus |
| arm_3R | 8454059..8454242 | 33..217 | 97 | -> | Plus |
| arm_3R | 8454944..8455180 | 314..552 | 97 | | Plus |
