Clone FMO03805 Report

Search the DGRC for FMO03805

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:38
Well:5
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG7394-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03805.5prime Sequence

407 bp (407 high quality bases) assembled on 2008-07-21

> FMO03805.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGAGCTCCGTA
ATTCTGGCGGGTCTTAGCGTGGCCGCCGTGGGATTCGCCGGAAAGCACCT
GATGCGCCGCATGCCCCAGATGACCACCAAATTCAACGAGGCCCTCAAGA
ACCTGCCCAAATACGATGCGGAGAGCATGGCCGCCTCCAAATACTACAAG
GGCGGCTTCGATCCCAAGATGAACAAGCGGGAGGCGTCCCTAATCCTAGG
TGTCAGCCCCAGTGCGTCCAAGATAAAGATTAAGGACGCGCACAAGAAGA
TCATGCTGTTGAACCATCCGGATCGAGGAGGATCTCCCTATTTGGCGGCC
AAGATCAACGAGGCCAAAGACTTTCTGGACAAAGCGAAGGCAAGCTTTCT
AGACCAT

FMO03805.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG7394-RC 1315 CG7394-RC 63..416 36..389 1770 100 Plus
CG7394-RD 1431 CG7394-RD 179..532 36..389 1770 100 Plus
CG7394-RA 534 CG7394-RA 63..416 36..389 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11562860..11563100 38..278 1205 100 Plus
3L 28110227 3L 11563301..11563413 277..389 565 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:26:35 has no hits.

FMO03805.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:41 Download gff for FMO03805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 56..416 28..389 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:41 Download gff for FMO03805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-RB 115..475 28..389 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:33 Download gff for FMO03805.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7394-RA 56..416 28..389 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:33 Download gff for FMO03805.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11562861..11563100 39..278 100 -> Plus
3L 11563303..11563413 279..389 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:41 Download gff for FMO03805.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11555961..11556200 39..278 100 -> Plus
arm_3L 11556403..11556513 279..389 100   Plus