FMO03809.5prime Sequence
502 bp (502 high quality bases) assembled on 2008-07-21
> FMO03809.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGACGACG
AAAAAATGGACATCATGCGCAAGGCATTCCAAATGTTCGACACACAAAAG
ACGGGCTTCATTGAGACGCTGCGTCTGAAGACGATCCTCAACAGCATGGG
TCAGATGTTCGACGATAGCCAACTGCAGGCTCTGATCGACGACAACGATC
CGGAGGACACCGGCAAGGTTAACTTCGACGGCTTCTGCAGCATCGCTGCC
CATTTCCTGGAAGAGGAGGATGCCGAGGCCATCCAGAAGGAGCTGAAAGA
GGCCTTTCGTCTGTACGATCGCGAGGGAAATGGTTACATCACCACCTCAA
CGCTGAAGGAAATTCTCGCCGCCCTCGACGACAAGCTCTCCTCCAGCGAT
CTGGACGGCATCATCGCTGAGATTGACACTGATGGATCCGGTACCGTGGA
CTTTGATGAATTCATGGAGATGATGGCGGGCGAGGCAAGCTTTCTAGACC
AT
FMO03809.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TpnC25D-RC | 1107 | CG6514-RC | 560..1006 | 38..484 | 2205 | 99.6 | Plus |
| TpnC25D-RA | 645 | CG6514-RA | 98..544 | 38..484 | 2205 | 99.6 | Plus |
| TpnC25D-RB | 688 | CG6514-RB | 142..587 | 39..484 | 2200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5218446..5218864 | 40..458 | 2065 | 99.5 | Plus |
| 2R | 25286936 | 2R | 11274671..11274793 | 367..245 | 195 | 77.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:03 has no hits.
FMO03809.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:55 Download gff for
FMO03809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 87..543 | 30..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:36 Download gff for
FMO03809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 82..538 | 30..484 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:49 Download gff for
FMO03809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TpnC25D-RA | 88..544 | 30..484 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:49 Download gff for
FMO03809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5218442..5218864 | 34..458 | 99 | -> | Plus |
| 2L | 5218927..5218952 | 459..484 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:55 Download gff for
FMO03809.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5218442..5218864 | 34..458 | 99 | -> | Plus |
| arm_2L | 5218927..5218952 | 459..484 | 100 | | Plus |
