FMO03811.5prime Sequence
982 bp (978 high quality bases) assembled on 2008-07-21
> FMO03811.5prime
ATACATAAAACGAAGTTATCAGTCGACATGGCCAATCTGCGTCCCCTGAG
CGCCGAACTTCGTCGCATTGCTGAAACGGAGCTAAACGAAGTGGAGGAGC
GAGTGCCCGCGGATCTGAAAGCTCTTCGGGATTGGTTGGCCAAGCAACCT
CATCTGAGGGCCCGCCAGGATGACCAGTTCCTAGTTGGCTTCTTGCGAGG
CTGCAAGTTTAGCCTGGAGAAGACCAAGTCCAAGCTGGATCACTTTTATA
CTATTAAGACGCTTATGCCTGAGCTCTTCGGCAAAAGATTGGTGGACGAA
AGGAACCTAATCTTGTGCAGATCTGGAACCTATGTTCGATTGCCCAAACC
TTGGGGAACCGATGGCCCCCGCCTGCAGCTTACGAACTATGAGAAATTCG
ACCCTAAGGAATTCAAGTTATTGGATCTCTTCCGCTACCAAACCATGATA
ACGGAACAGTCAATCCGTGAGGATGACCACAGCAACATTAGCGGCTACGT
CGAGATCGTTGACATGGCCAAAATGAGCCTCAGTTTTCTGGCCCAACTGG
ATTTCACGCTCATCAAAAGGATGGGAATATTCGCTGAGAAGGCACAGCCC
ACTCGCTTGAAAGGAGTCCATCTGATCAATTGCCCCAAGGAGGGAGTGGC
GTTACTGAATTTGGCCCAAGAGCCTAATGCCCAGCAAGCTCCAGCAGCGG
TTTCACGTGTATAAAAATCTCGAGCAATTAAACGAGGTGATACCACGCGA
ATACCTGCCGGAAGAATATGGTGGCAACAATGGACGTATAGCCGACATTC
AGGCGGAAGCGGAAAGAAATTGCTGTCCTATGAGAGCTATTTTGCTGAGG
ATTCCCAGTACGGAGTGGATGAGCAGCTGCGGCCTGAAAAGCGTGTTAAT
GCGGATTCAATTTTGGCGCTGAAGGATCCTTTCCGAAAACTCGACATCGA
TGCAAGCTTTCTAGACCATTTCGTTTGGCGCT
FMO03811.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30339-RA | 1023 | CG30339-RA | 42..965 | 28..951 | 4500 | 99.4 | Plus |
| CG12926-RA | 1347 | CG12926-RA | 312..421 | 140..249 | 235 | 80.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9602127..9602500 | 700..326 | 1825 | 99.7 | Minus |
| 2R | 25286936 | 2R | 9602562..9602860 | 326..28 | 1495 | 100 | Minus |
| 2R | 25286936 | 2R | 9601489..9601741 | 951..700 | 1090 | 98 | Minus |
| 2R | 25286936 | 2R | 9609173..9609282 | 249..140 | 235 | 80.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:49 has no hits.
FMO03811.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:47 Download gff for
FMO03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30339-RA | 42..970 | 28..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:24:01 Download gff for
FMO03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30339-RA | 42..970 | 28..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:56 Download gff for
FMO03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30339-RA | 42..970 | 28..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:56 Download gff for
FMO03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9601485..9601740 | 701..955 | 97 | <- | Minus |
| 2R | 9602127..9602499 | 327..700 | 99 | <- | Minus |
| 2R | 9602562..9602860 | 28..326 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:47 Download gff for
FMO03811.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5488990..5489245 | 701..955 | 97 | <- | Minus |
| arm_2R | 5489632..5490004 | 327..700 | 99 | <- | Minus |
| arm_2R | 5490067..5490365 | 28..326 | 100 | | Minus |
