FMO03815.5prime Sequence
559 bp (559 high quality bases) assembled on 2008-07-21
> FMO03815.5prime
CGTATAGCATAATAAAACAAAGTTATCAGTCGACATGGTAGTGCTGACCT
CCCGCTGGTCGCCCATAATTTGGTCGGATAATGTCCGGACGGGAAGCTAT
GCCGTGGCCGGCTTTACGGCTGCGCTATCCGCCGTAATGATCACGCTGAT
TTCGTATATGCTAGCAGGCGGGGAGTCTGCGCAGCTCTATTCCCCGCTCT
TTGAGACGGATATACGTTCGTCGATGCCCGTGGCAGGTGGCTTCTTTATC
ATCTACTTCCTGCTAATCATCCTGTCTTCCTATTTGGTCTACTACGATAT
TAAGATCAGCACTCGAGGATGGCTGCTACCCTGGCTGGGTCTAATTGGAC
TAGCCATTCTCTTCCAGTTTAGCTGGAGCCTTTGGCTTATTGGAGGCTAC
TATATTTATCTGGAGCAAACCTTCTCGGCCCTTTTGAACTTCGTTTGGGT
AGCCTACAATATCTATTGCTGGCTGGTGGTCTTCTCGCAGTACCAGATAT
TCCTGGAGATCCAGAATCCGAACATTGAGCTGCTCATGCCAGCAAGCTTT
CTAGACCAT
FMO03815.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7713-RB | 874 | CG7713-RB | 124..632 | 33..541 | 2485 | 99.2 | Plus |
| CG7713-RA | 816 | CG7713-RA | 66..574 | 33..541 | 2485 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17795363..17795639 | 33..309 | 1325 | 98.6 | Plus |
| 3R | 32079331 | 3R | 17795697..17795800 | 306..409 | 520 | 100 | Plus |
| 3R | 32079331 | 3R | 17795995..17796075 | 461..541 | 405 | 100 | Plus |
| 3R | 32079331 | 3R | 17795863..17795913 | 410..460 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:04 has no hits.
FMO03815.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:56 Download gff for
FMO03815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7713-RA | 71..583 | 28..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:02 Download gff for
FMO03815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7713-RA | 71..583 | 28..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:48 Download gff for
FMO03815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7713-RA | 62..574 | 28..541 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:48 Download gff for
FMO03815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17795358..17795639 | 27..309 | 97 | -> | Plus |
| 3R | 17795701..17795800 | 310..409 | 100 | -> | Plus |
| 3R | 17795863..17795913 | 410..460 | 100 | -> | Plus |
| 3R | 17795995..17796075 | 461..541 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:56 Download gff for
FMO03815.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13621080..13621361 | 27..309 | 97 | -> | Plus |
| arm_3R | 13621423..13621522 | 310..409 | 100 | -> | Plus |
| arm_3R | 13621585..13621635 | 410..460 | 100 | -> | Plus |
| arm_3R | 13621717..13621797 | 461..541 | 100 | | Plus |
