FMO03816.5prime Sequence
1220 bp (961 high quality bases) assembled on 2008-07-21
> FMO03816.5prime
CCTTATACGAAGTTATCAGTCGACATGCTGCGATTGCTCCAGAAGAGAAC
CAATCTCATAAAGCTAGTAGTACCCGGCCCCCGACTTCACCAGACGATTG
CGCAAACAGCGATAAAGGAAATCCCAGTGATAAAGCCCATCAGCACTCCG
AAAAGCGACAAGACCGTCGGAAGATGGTTCCTGGGAGTCAGCGGCATGGT
CTTCGTGGCCGTTGGTCTAGGCGGAGTAACCCGACTGACAGAGTCCGGAC
TGTCCATGGTCACTTGGAAGCTGACGGGTGAACGTATGCCCCGAACCCAG
GAGGAATGGGTGCAGGAGTTCAATCTCTACCAGCAATACCCAGAGTACAA
GCTAAAGAATGTGAATATGACCGTGGAGGAGTTCAAGTTCATTTTCATGA
TGGAGTACATGCACAGGATGTGGGGTCGTGCCATCGGCGGGTTCTTCCTT
TTGCCGGCTGTTTACTTCTGGAGAAAGGGATACTTCTGTGCGAAGACCAA
GAAGAGCGTCCTGCTGCTGGGCACACTGATTGGCCTGCAAGGTCTGATGG
GATGGTACATGGTCAAGTCCGGGCTGGAAGACAGGTTCCAGGATCCCAAC
GACGTGCCACGGGTATCCCAGTATAGATTGGCCTCCCACCTGGCAGCTGC
CTTCGTCCTGTACTCACTCTCCCTGTCAAAGGCCATGTCCCTGCTCATCC
CCACGAACACATTCGTGATCCAAGCCAAGAAAGCATTTAATATCAAGGGG
CTGACGCATTTGACGAAGCAATGGTCCTGCTGACTGCCATTTTCTGGAGC
CTTTGTAGCCGGACTAGACGCCGGACTCGTGTACAACTCGTTCCCGAAAG
ATGGGCGAAAAGTGGATTCCCGATTGACATGTGGACGTTTGCGCCATACA
GAAGAACATCACCGGAGAATCCGACGACGGTGCAGTTCAAATCCACCGCA
TTCTTGGTATTAGACCAGTAACGCTGACCACCGCTTCTGTGGCTGGTAAC
CAGATGATGCAGTGCCCAGCGCGCCACTGGGACATCATCGCCGTGGTGCT
TATGGCCTGACGCAGCAAGCTTGACGTACCACTTGCTTAACTACGTTGCC
CGTGCCCTCTGGCACGACACAGATCGCTGCTATCTGCTGAATTCGCCATT
GGGGCTGCCACAAGCTCGACTGTTGAGTCCTCCGAAGCAAGCCTTCATAG
ACAACTTCGTTGTGCGACCT
FMO03816.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3803-RA | 1340 | CG3803-RA | 134..1225 | 25..1114 | 4820 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23952686..23953390 | 1059..354 | 2770 | 96.2 | Minus |
| 2R | 25286936 | 2R | 23953449..23953583 | 353..219 | 675 | 100 | Minus |
| 2R | 25286936 | 2R | 23953638..23953743 | 221..116 | 530 | 100 | Minus |
| 2R | 25286936 | 2R | 23953822..23953915 | 118..25 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:44 has no hits.
FMO03816.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:13 Download gff for
FMO03816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 121..1224 | 17..1121 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:31 Download gff for
FMO03816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 97..1200 | 17..1121 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:11 Download gff for
FMO03816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3803-RA | 130..1233 | 17..1121 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:11 Download gff for
FMO03816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23952620..23953390 | 354..1121 | 95 | <- | Minus |
| 2R | 23953449..23953581 | 221..353 | 100 | <- | Minus |
| 2R | 23953639..23953741 | 118..220 | 100 | <- | Minus |
| 2R | 23953823..23953919 | 17..117 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:13 Download gff for
FMO03816.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19840143..19840913 | 354..1121 | 95 | <- | Minus |
| arm_2R | 19840972..19841104 | 221..353 | 100 | <- | Minus |
| arm_2R | 19841162..19841264 | 118..220 | 100 | <- | Minus |
| arm_2R | 19841346..19841442 | 17..117 | 96 | | Minus |
