FMO03818.5prime Sequence
532 bp (532 high quality bases) assembled on 2008-07-21
> FMO03818.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGGGCGGCACCT
TTCGCAACACGCAGTGGGATCCCACGCTGCTGTCCTCACAGATTGTGTCC
ATGCAGTTCTGCGTGTACTTCACCCTTGGCCTACTCGTCTTCGTGGCCAA
CAAGTTGTCCGGGGACAACTATAGTCTGGATCACTTGTTCGAATACCATG
AGATCCACATCTACGACATGGGTGGCCGCCTGGTGATCTGCGCATTTGTT
TTAAATGCGTTCTTAGCCTCCCTGGCACTGTGGTGCATTGTGAGAAGAGC
CAAGCTCTGTCTGGACTTTAGTTGCACCTTCCACGTGCTGCATTTGCTGA
TCTGCTGGTGGTACAACCGCTCCTTTCCCGCGAACGCATCGTGGTGGCTA
CTGAATGTCATCACCGGCACAATAATGTGCATAGGCGGCGAGTTTCTCTG
CCTGCAGACCGAGATGAAGGAGATCCCAGTGGGCTATGCGGCCCTCAATC
AAAAGTCGGACGTCGCAAGCTTTCTAGACCAT
FMO03818.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11753-RA | 699 | CG11753-RA | 110..590 | 34..514 | 2405 | 100 | Plus |
| CG11753-RC | 801 | CG11753-RC | 215..692 | 34..514 | 2350 | 99.4 | Plus |
| CG11753-RB | 696 | CG11753-RB | 110..587 | 34..514 | 2350 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8653544..8653738 | 320..514 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 8653120..8653286 | 34..200 | 835 | 100 | Plus |
| 3R | 32079331 | 3R | 8653356..8653477 | 200..321 | 610 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:02:34 has no hits.
FMO03818.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:12 Download gff for
FMO03818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11753-RA | 103..595 | 28..521 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:37 Download gff for
FMO03818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11753-RA | 98..590 | 28..521 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:32 Download gff for
FMO03818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11753-RA | 103..595 | 28..521 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:32 Download gff for
FMO03818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8653113..8653285 | 28..199 | 98 | -> | Plus |
| 3R | 8653356..8653477 | 200..321 | 100 | -> | Plus |
| 3R | 8653546..8653743 | 322..521 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:12 Download gff for
FMO03818.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4478835..4479007 | 28..199 | 98 | -> | Plus |
| arm_3R | 4479078..4479199 | 200..321 | 100 | -> | Plus |
| arm_3R | 4479268..4479465 | 322..521 | 98 | | Plus |
