FMO03821.5prime Sequence
1035 bp (1035 high quality bases) assembled on 2008-07-21
> FMO03821.5prime
ATAGCATACATAATACGAAGTTATCAGTCGACATGGTCAACAACGCCTCG
GCGGCGGTCCAGGGTCAGGGTCCCAGTCAGCAGAAGGCGGGTGCCACGCC
CCTGGGCGTGGGCAGTCGTTCCGGACGGAGTTACCTGGAGCGAATGGCCT
CGGCGCCGCTACTCACCAATCAGCCCAAATCCTGTCTCAGCCGCAAATCC
TGCCTGCACAAATCCCAGAACACTACAGCCAGTTCCGCAGATCTCTCGCC
GACGGACACCGATGTCGCGGACAGTGCCAGTCATAGCTGTATCTGCAGCA
AGGATAGTGACAGCAACGGCGAAGTGAGCCGTGGCCCCAAAAAGCATGTG
ATCTTCGCTGATGATGAGGGTCTATCGCTAACCGAGGTTCGTGTGATGTC
CGAACCCTCGAATGTGCCGCCATATTGGAGCATGAAGTTTCTGGAGCAAA
TTACACAGGGCCTGGTCAGCCCACATCCTCCGGATCAGTGGACAGTGGAC
TTCAAGCAGCCAGCCTCAGACTATCTATCATTTAGACAAAAGATAGAACG
CGACTTTGTTTCCTTGGAGAATGTGATCGTCAAGGATGAGGAATCGATTG
TCGTGGGCACCATCAAGGTGAAGAATATCGACTTCCAGAAGGAGATCATT
GTCCGTGTGACCTGGGATGATTGGAAGAGCCAGCAGGATATCTTCTGTAC
ATACGCCAGGGCCTATGGACCGGCTACTTGTGCTCATGTAGTCTTCGATA
CATTCTCCTTCAAAATCACCTTGCCGCCATCCTCCAAGCGCCTGGAATTC
TGCATCTGCTATCGCACCAACGAAACAGAATATTGGGATAATAATGATGG
TAAAAACTACACCATTAGCAAGCGATCGCCCTTTTATTACAACGCCTTGT
CGCCCTATGATAAGGGTCAGATCGCAACTCGAGCCAGCAAAATAAGGTCC
ACCCTGACCGATGCCTTGGCCAAGGTGCAGACCAAATGGCTGGCACCAGA
GCACATACGCCATATTGGGCAGCTTTCTAAACCAT
FMO03821.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gbs-70E-RC | 2846 | CG9238-RC | 671..1661 | 32..1018 | 4810 | 99.4 | Plus |
| Gbs-70E-RB | 2737 | CG9238-RB | 671..1661 | 32..1018 | 4810 | 99.4 | Plus |
| Gbs-70E-RA | 2084 | CG9238-RA | 509..1499 | 32..1018 | 4810 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14542354..14542669 | 849..534 | 1580 | 100 | Minus |
| 3L | 28110227 | 3L | 14547117..14547413 | 328..32 | 1485 | 100 | Minus |
| 3L | 28110227 | 3L | 14542733..14542941 | 535..327 | 1045 | 100 | Minus |
| 3L | 28110227 | 3L | 14542122..14542295 | 1018..849 | 580 | 95.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:59 has no hits.
FMO03821.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:35 Download gff for
FMO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9238-RA | 506..1499 | 26..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:47 Download gff for
FMO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9238-RB | 664..1657 | 26..1018 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:24 Download gff for
FMO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gbs-70E-RA | 506..1499 | 26..1018 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:24 Download gff for
FMO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14542733..14542939 | 329..535 | 100 | <- | Minus |
| 3L | 14547117..14547416 | 26..328 | 99 | | Minus |
| 3L | 14542122..14542295 | 849..1018 | 96 | <- | Minus |
| 3L | 14542355..14542667 | 536..848 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:35 Download gff for
FMO03821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14540217..14540516 | 26..328 | 99 | | Minus |
| arm_3L | 14535222..14535395 | 849..1018 | 96 | <- | Minus |
| arm_3L | 14535455..14535767 | 536..848 | 100 | <- | Minus |
| arm_3L | 14535833..14536039 | 329..535 | 100 | <- | Minus |
