FMO03822.5prime Sequence
1087 bp (871 high quality bases) assembled on 2008-07-21
> FMO03822.5prime
TCGTATAGCATACATTATACGAAGTTATCAATCGACATGAAGGTGTTTTT
TGTTCTTGCCGCCTTACTGGCAGCCGTGAGTGCCCTGCCCATTGAGGAGC
GCGTCAATGGAGAGAATGGCTGGTTCATCCCCAAGCTTGATGGAAGCTTC
GAGTGGATGGACATGCAGGATGCCGAGGATCTTCTGGCCAACGGAGCCCA
GATGGAGGGCCGCATCATCACCAACGCCGTGAACTTCTATGTCTACACCA
AGTCGAACCCCACCGATGGCAAGGAGATCAAGGCCAAGTCCGGCTCCGTC
GAGGATTCCCACTTCAACAAGGATCATGGCACCCGCTTCGTCATCCACGG
CTGGACCCAGAGGTACTCCGACGACATGAACACCCGCATCACCAAGGCCT
GGTTGTCCAAGGGCGACTACAACGTGATCGTCGTTGACTGGGCCCGTGCC
CGATCCGTGGACTACGCCTCTTCCGTTCTGGCTGTTCCTGGAGCCGGTGG
CAAGGTTGGTGAGATGATCAAGTACCTGCACGACCACCACGGCTTGGACT
ACAATAGCTTGAAGGTGATCGGACACAGCCTGGGAGCCCATGTTGCTGGA
TACGCCGGAAAGACCGTCGGAGACAAGCGCGTTCACACCATTGTGGGTCT
GGATCCTGCCCTCCCCCTCTTCAGCTACGATAAGCCCGCTAAGCGTCTAT
CCACCGATGATGCCCACTACGTAGAGTCCATCCAGACCAACGGCGGCAAA
CTGGGATTCCTGAAGCCCATCGGCAAGGGAGCCTTCTACCCCTATGGAGG
CAAGAGCCAGCCCGGATGCGGACTGGACGCCACCGGATCCTGCTCTCACG
CACGCTCCGTCTCTACTACGCCGAGGCCGTCACCGAGGACACTTTGGATC
CATTAAGTGCCCTGACTACGAGGATGCCGTTGCCAGAACTGCGGAGCACT
ACTCCAGCGATCGCATGGAGCAATTACCAACGACTACATGGTCGAGGTGA
CTTCTATGTCCCCGTGAACATCGAGGCACCTTCGGCAGATTGAGCAAGCT
TTTCTAGATCATTCGGTTGCGCGCGGACCGAGTAAGA
FMO03822.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6283-RA | 1083 | CG6283-RA | 24..1042 | 35..1044 | 4750 | 98.3 | Plus |
| CG6277-RA | 1085 | CG6277-RA | 337..1045 | 334..1037 | 1230 | 79.1 | Plus |
| CG6271-RA | 1072 | CG6271-RA | 324..1036 | 330..1037 | 1205 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27020295..27021256 | 1030..76 | 4340 | 98.4 | Minus |
| 3R | 32079331 | 3R | 27022122..27022819 | 1027..334 | 1005 | 78.9 | Minus |
| 3R | 32079331 | 3R | 27025015..27025716 | 1027..330 | 980 | 78.6 | Minus |
| 3R | 32079331 | 3R | 27006112..27006607 | 891..397 | 615 | 75.4 | Minus |
| 3R | 32079331 | 3R | 27017499..27017878 | 770..391 | 535 | 76.1 | Minus |
| 3R | 32079331 | 3R | 27018916..27019319 | 800..397 | 520 | 75.2 | Minus |
| 3R | 32079331 | 3R | 27021314..27021355 | 76..35 | 210 | 100 | Minus |
| 3R | 32079331 | 3R | 27019531..27019631 | 179..79 | 205 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:30:43 has no hits.
FMO03822.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:15 Download gff for
FMO03822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..1042 | 35..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:29 Download gff for
FMO03822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..1042 | 35..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:45 Download gff for
FMO03822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6283-RA | 24..1042 | 35..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:45 Download gff for
FMO03822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27020280..27021255 | 77..1044 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:15 Download gff for
FMO03822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22846002..22846977 | 77..1044 | 98 | <- | Minus |
