Clone FMO03824 Report

Search the DGRC for FMO03824

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:38
Well:24
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10465-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03824.5prime Sequence

618 bp (380 high quality bases) assembled on 2008-07-21

> FMO03824.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGAATCAA
TGTCAGGTGATCACAAAATTTTATTAAAAGGACATTCCTCCCAATATTTA
AAACTTAATGTTGGTGGTCATTTATATTATACCACAATTGGAACACTGAC
GAAAAACAATGACACAATGCTGAGCGCAATGTTTAGTGGTAGAATGGAAG
TGCTGACTGATTCGGAAGGATGGATTTTAATCGATCGCTGTGGAAATCAT
TTTGGTATCATTCTTAATTATTTAAGAGATGGCACTGTTCCATTACCAGA
AACTAACAAGGAAATTGCAGAATTGCTTGCCGAAGCCAAATACTACTGCA
TTACCGAGTTAGCTATTTTCTGGGGAACGGGCACTATATGCTCCTTCAGG
AGCCAAGCCAATTTGCCGCATTCCACTTATACTTCCCAAAAGAAAAACAC
TTTTATTAAGTGTTCCTTTAAGCCGGCTGTATTCTGGGGGTCACGGCAAA
TACCAGTATTCTACCCAGTACTCCAAACACAACTTATAAAAATTTGATTT
TTTGAAAGCTTCTTTGCCTAACAACAATTTTGTTTATAAAAACATATGGG
CCAGAGAATTCGCGTGGG

FMO03824.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10465-RA 1241 CG10465-RA 254..829 38..591 2020 92.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5340561..5340742 219..38 910 100 Minus
2R 25286936 2R 5340258..5340514 471..217 895 94.2 Minus
Blast to na_te.dros performed on 2014-11-28 20:23:59 has no hits.

FMO03824.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:17 Download gff for FMO03824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 247..711 31..491 95 == Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:08 Download gff for FMO03824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 243..707 31..491 95 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:41 Download gff for FMO03824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10465-RA 247..711 31..491 95 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:41 Download gff for FMO03824.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5340198..5340512 219..523 91 <- Minus
2R 5340562..5340749 31..218 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:17 Download gff for FMO03824.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 1227703..1228017 219..523 91 <- Minus
arm_2R 1228067..1228254 31..218 98   Minus