FMO03827.5prime Sequence
1128 bp (1045 high quality bases) assembled on 2008-07-21
> FMO03827.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCAGTTCGCTC
TGCTAATCCGATACGCGCTAGAAGTTTGATCCGAGACAATTTGGAGAAAC
AGGCTGGTTGTCTAAATTTAATCCACTCCAGAATGCCGAACATCAAAGTG
TTTTCGGGCACCTCGCATCCGGATTTGGCCCAGCGGATAGTCGATCGCCT
GGGAATCGATCTCGGCAAGGTGGTTACGAAGAAGTTCAGCAACTTGGAGA
CCTGTGTGGAAATTGGGGAATCGGTGCGCGGCGAGGATGTGTACATCGTG
CAATCGGGATCCGGCGAGATCAACGATAACTTGATGGAGCTGCTGATCAT
GATCAATGCGTGCAAAATTGCCTCAGCCTCTCGTGTTACAGCTGTGATTC
CTTGCTTTCCATATGCCCGCCAAGATAAAAAAGACAAGAGTCGTGCGCCC
ATCTCGGCCAAATTGGTGGCCAACATGCTGTCCGTTGCTGGAGCGGATCA
CATCATCACCATGGATCTGCACGCCTCACAGATTCAGGGCTTCTTTGATA
TACCAGTTGATAATCTCTATGCCGAGCCGGCGGTACTCAAGTGGATCAAG
GAGAACATTCCCGAGTGGAAGAACTCGATCATTGTGTCGCCCGATGCTGG
CGGTGCCAAGCGTGTCACCTCAATTGCCGATCGACTGAACGTGGAGTTCG
CTCTGATACACAAGGAGCGCAAGAAGGCCAACGAAGTGGCCTCTATGGTA
CTGGTGGGTGATGTCAAGGACAAGATTGCCATTCTGGTCGATGACATGGC
CGACACATGCGGCACCATTGTGCATGCCGCCGATCGCCTGGTGGAGGCGG
GAGCCACCAAGGTGTATGCTATTCTGACGCATGGCATTTTCTCGGGTCCG
GCGATCTCGCGGATCAATAATGCCTGTTTCGAGGCGGTAGTGGTGACAAT
ACCATACCGCAGATGGACACATGCGGGACTGTCCAAATCCAGTGCATTGA
TGTCTCGATGATGTTCGCGAGCGTCAGAGACCACACGGCGAGAGTGTCTC
GTATCTCTTCCAAATGTCATACGCAAGCTTTCTAGACATCGTGGCCCGCG
GGTCAAGGTACGCTAATCCTATCATATC
FMO03827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6767-RH | 1847 | CG6767-RH | 8..1050 | 37..1067 | 4945 | 98.8 | Plus |
| CG6767-RA | 2010 | CG6767-RA | 171..1213 | 37..1067 | 4945 | 98.8 | Plus |
| CG6767-RF | 2106 | CG6767-RF | 255..1309 | 37..1067 | 4815 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9684532..9684856 | 984..662 | 1525 | 99.4 | Minus |
| 3L | 28110227 | 3L | 9694233..9694450 | 254..37 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 9689265..9689449 | 438..254 | 925 | 100 | Minus |
| 3L | 28110227 | 3L | 9684921..9685048 | 662..535 | 640 | 100 | Minus |
| 3L | 28110227 | 3L | 9686364..9686465 | 538..437 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:49:19 has no hits.
FMO03827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:21 Download gff for
FMO03827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6767-RA | 166..1223 | 31..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:34:37 Download gff for
FMO03827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6767-RA | 159..1216 | 31..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:05 Download gff for
FMO03827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6767-RA | 166..1223 | 31..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:05 Download gff for
FMO03827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9684522..9684855 | 663..992 | 98 | <- | Minus |
| 3L | 9684921..9685045 | 538..662 | 100 | <- | Minus |
| 3L | 9686365..9686463 | 439..537 | 100 | <- | Minus |
| 3L | 9689265..9689448 | 255..438 | 100 | <- | Minus |
| 3L | 9694233..9694453 | 31..254 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:21 Download gff for
FMO03827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9677622..9677955 | 663..992 | 98 | <- | Minus |
| arm_3L | 9678021..9678145 | 538..662 | 100 | <- | Minus |
| arm_3L | 9679465..9679563 | 439..537 | 100 | <- | Minus |
| arm_3L | 9682365..9682548 | 255..438 | 100 | <- | Minus |
| arm_3L | 9687333..9687553 | 31..254 | 98 | | Minus |
