FMO03828.5prime Sequence
865 bp (865 high quality bases) assembled on 2008-07-21
> FMO03828.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGAGTTTTC
TGATCCTTCTGGGTTTCGCTGCTCTGGCCGCTGCCGATGTCAAGCATCTG
ACAGATCGCAATCTGGACCTCTTCAAGTACAATCCCAGCGATATCTACAC
CCTGCCCGAGGACATCGATGACGACAAGCCGGCGGTGCACTTTAGCGGCG
ATGTCATGAAGGCCAAGACCGAAACCCTCCAGAACTACAACTCGGGCAAG
AAATTCAAGCTGGAACTGAAGACCCAGAACGGCATCGAAGTGAGCAGCGT
GGGCAAACTGAAGGACGACAAGACCTTCGTGGTCAGCGGCTCCTACTCGT
TCACCGGCGCCGATGGCAAGCGGTACAAGACCCGTTACACCGCCGATGAG
TTCGGCTATCATCCCATCACCGAGCTGGATCTGGACATTCCCGAACCCCA
GCCTTTGGCTTCTGCCGGACAGCGCCAGACCGTGGATCCCAGCAGCCTGT
TGGGCAACAAGAACCGTTTCCAGTTCCTGCAGCAGACCCTGGACTCCGAT
CAAGGATCGCAAGGTCCTCTGAGGGGCAGTGGACAGAGTGGCGATGACTA
TAGCTACACGTCTCCCTATGGAAATGGCAATGCTTACGGTAATGGAGTTG
GAAACGGATACGGAAATGGAGTTGGCAACGGATACGGAAATGGAGTTGGA
AACGGACAAGGAAATGGAGCTGGAAACGCATACGGAAATGGAAATGGAGT
TGGAAACGGATACGGAAATGGCAACGGCAATGGCTACGATTATCAGCCAC
CTCAGGTGCCCCTGGCGACGCCATCTCGTCTGTATCTGCCCACCGCAGCA
AGCTTTCTAGACCAT
FMO03828.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr11A-RA | 1326 | CG2560-RA | 113..922 | 38..847 | 4050 | 100 | Plus |
| Cpr11A-RA | 1326 | CG2560-RA | 693..792 | 666..771 | 235 | 82.1 | Plus |
| Cpr11A-RA | 1326 | CG2560-RA | 741..846 | 618..717 | 235 | 82.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12488642..12489044 | 445..847 | 2015 | 100 | Plus |
| X | 23542271 | X | 12487827..12488041 | 50..264 | 1075 | 100 | Plus |
| X | 23542271 | X | 12488317..12488496 | 265..444 | 900 | 100 | Plus |
| X | 23542271 | X | 12488832..12488944 | 659..771 | 295 | 84.1 | Plus |
| X | 23542271 | X | 12488856..12488968 | 635..747 | 295 | 84.1 | Plus |
| X | 23542271 | X | 12488815..12488891 | 666..742 | 220 | 85.7 | Plus |
| X | 23542271 | X | 12488863..12488939 | 618..694 | 220 | 85.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:02:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 4063..4151 | 681..593 | 130 | 60.7 | Minus |
FMO03828.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:59 Download gff for
FMO03828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr11A-RA | 106..926 | 30..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:12 Download gff for
FMO03828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr11A-RA | 103..923 | 30..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:21 Download gff for
FMO03828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr11A-RA | 106..926 | 30..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:21 Download gff for
FMO03828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12487827..12488041 | 50..264 | 100 | -> | Plus |
| X | 12488317..12488496 | 265..444 | 100 | -> | Plus |
| X | 12488642..12489048 | 445..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:59 Download gff for
FMO03828.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12381860..12382074 | 50..264 | 100 | -> | Plus |
| arm_X | 12382350..12382529 | 265..444 | 100 | -> | Plus |
| arm_X | 12382675..12383081 | 445..852 | 99 | | Plus |
