FMO03829.5prime Sequence
1207 bp (1058 high quality bases) assembled on 2008-07-21
> FMO03829.5prime
TTCGTATAGCATACATAAAACGAAGTTATCAGTCGACATGTTACAGACCC
AGCTGGCAGTAAAAATGGCTGTCAAAAAACCACTTATGACGCCAGTGGTT
AATCTAAGGTCCAAACGCCTTGCAGATCCAGAAGTTACATGTTTTGCTCC
AATTACTACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCTTCCAT
CCATACTGGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATGAATAC
GATCCTCAAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGTAATGG
CAGTGACAAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGATGACA
AAGAAAAAGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTTATAGA
GACGAAGTCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCACCGGCA
AAACGATGATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAAACAGG
GAGGTGCCACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCATTGAT
AGTGGTTGTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCGGTGGC
CGCCAAAATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCTCGGAA
AATCGGAGCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCTCCAAA
CGTGGTGGACGGATCATACACGAAAAAGACGTTTTTCTGCCACCCCTAGC
ATTGTCGCCACCTTCTATTGCTCCCAAATAGGAACAAGTCCCAGCCACAA
GGCCATGCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTGGTGACA
TCGGATACAGCATTACAGAGATTATGAAATCACCAAGCAAGGTTGTTCTT
CTACGCAACATGGTAGGACCCGGGGACGTTGACGAAGATTGGAACCCGAG
TAAAAGACGATGCACACCAGTACGGGAAGTGAACAGTGTATCATTCACGA
ATCGTTCGGAACTGGGCAGAAGATGCAGTTAAATATCGTAAGAGTTTAGG
CGGATCGAAGGTGCATAAAGCTGTATGGAACTAATGACGTTTTTGAGACG
TCCAGGGGCGAGCGGGGGCTTCACACTATGATAGTTAATGTTTCCAATTA
CATGCAAGCCTTCCAGACATTCCTTGGGCCGCGGCCGGTATGGTCCTTAG
ATCCTAT
FMO03829.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spf45-RA | 1397 | CG17540-RA | 143..1279 | 38..1153 | 4945 | 96.9 | Plus |
Spf45-RC | 1257 | CG17540-RC | 48..1139 | 83..1153 | 4720 | 96.8 | Plus |
Spf45-RB | 1354 | CG17540-RB | 188..1236 | 126..1153 | 4505 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 23067152..23068144 | 1065..83 | 4360 | 98.3 | Minus |
2L | 23513712 | 2L | 23068200..23068244 | 82..38 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:49 has no hits.
FMO03829.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:37 Download gff for
FMO03829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 143..1174 | 38..1059 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:58 Download gff for
FMO03829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 204..1235 | 38..1059 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:34 Download gff for
FMO03829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spf45-RA | 143..1174 | 38..1059 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:34 Download gff for
FMO03829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 23067158..23068144 | 83..1059 | 98 | <- | Minus |
2L | 23068200..23068243 | 39..82 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:37 Download gff for
FMO03829.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22959890..22960876 | 83..1059 | 98 | <- | Minus |
arm_2L | 22960932..22960976 | 38..82 | 100 | | Minus |