FMO03831.5prime Sequence
903 bp (903 high quality bases) assembled on 2008-07-21
> FMO03831.5prime
CTAAAGGGGGGATCTCGAGGGATCCATAACTTCGTATAGCATAATAATAC
AAAGTTATCAATCGACATGGTTGTTGCTGTTGTCGCTGCCGACGTCGTTG
AAAGAAACAGTAGCAGAAGCGGAATCGACGAAAGTAGTGGTTTCGCTGTT
TCTCCATCATTTGTAGGTTCTACACCAGACTCTGTGGTTAAAAGCAATTA
TACTGATAAGGAAACCACAACAACAAGGGCGGAACGAAAAGCGCTAGATG
ACAGTGTTTCTGGCCAGCAAGCGTTAAGAGAGACTCAAAAGAACTTTTTT
CAAAAAAAGTTAAAAATCAACATCACAAACAACAACATGATTGATGCGGC
CGAAGCAACGACAACGACGGAATCGACGCGGTCAATAAAGGGCATTCCCA
CCAAGAGTGCCGTCAGCCAGCGAAACGTGGATATCAAGATAGACAGGACC
AGTAACATGGAGGCGGCCACACAAGAGTTAACAAAGAAGGTGCTCAAACT
AGATCTTGGCGGCAAGAACCTCGATGAATACTCACTTAAATCGCCCAAGT
CACCTATAGCTGCACGATTGCCGCATCAAACGTCTATAACGTCATCGGTG
GATGTAGAGGACAGGAAGACATTACGAGAGGCCTTATACCAGGGAATATT
TCATCGGCACCGCCGTACTATTTTTGCCGTGGGCAGTTTCCTGCGTATGC
TGCGCAGCCGCAACTCACAATACAATACGATACGCAGCTCTTCGGAAGGC
GAGGACATCGATGAGCCGAAGCATCATCCGCAGAAACTTGAGCATTCCCA
AGAGTACCTCCAGACACCTGGCCAAGAAGTAACAACCATATACGCAACAT
TGCCATTTGAACAACAGGGAAAATCGGATTCGCTTGCAAGCTTTCTAGAC
CAT
FMO03831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17159-RB | 3819 | CG17159-RB | 1621..2439 | 67..885 | 4095 | 100 | Plus |
| CG17162-RH | 4590 | CG17162-RH | 1621..2439 | 67..885 | 4095 | 100 | Plus |
| CG17162-RF | 3431 | CG17162-RF | 1233..2051 | 67..885 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 23088715..23089210 | 562..67 | 2480 | 100 | Minus |
| X | 23542271 | X | 23087304..23087507 | 765..562 | 1020 | 100 | Minus |
| X | 23542271 | X | 23087111..23087232 | 885..764 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:00:38 has no hits.
FMO03831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:40 Download gff for
FMO03831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17162-RE | 1473..2298 | 60..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:38 Download gff for
FMO03831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17162-RD | 1292..2117 | 60..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:37 Download gff for
FMO03831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17162-RF | 1229..2054 | 60..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:37 Download gff for
FMO03831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 23087107..23087230 | 766..889 | 98 | <- | Minus |
| X | 23087304..23087506 | 563..765 | 100 | <- | Minus |
| X | 23088715..23089206 | 68..562 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:40 Download gff for
FMO03831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| XHet | 65925..66048 | 766..889 | 98 | <- | Minus |
| XHet | 66122..66324 | 563..765 | 100 | <- | Minus |
| XHet | 67533..68032 | 60..562 | 99 | | Minus |
