FMO03835.5prime Sequence
426 bp (426 high quality bases) assembled on 2008-07-21
> FMO03835.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAACTCAGCAC
ATACAACTTCTTGACCTCCGTGGCCATCAAGGGCGTCAAAGTGGGATTTC
CCCTGAAACTGACGATTAACAAAAAGGAAGTGGTGGAGAGCGAATTTAAT
CCAACTTTTGTGGAGAGAATCCTTCCCAAGCTGGACTGGTCAGCGGTCTA
TGGAGCTGCTCAGGTGGCGGAACTCACAGAAGACATTCCTGCCGTTCAGC
CTGAAAACATTGTGGAGAATGAACTGCTTTTGCAGAAGCTTCACCATCTG
CTCTTCGAGATCGACGTGCTCGAGGGTCAACTGGAGTGCCCGGAGACAGG
TCGTGTGTTTCCCATCAGCGATGGTATACCAAACATGCTCCTTAACGAGG
ACGAGGTCGCAAGCTTTCTAGACCAT
FMO03835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12975-RA | 627 | CG12975-RA | 119..490 | 37..408 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21216132..21216324 | 408..216 | 965 | 100 | Minus |
| 3L | 28110227 | 3L | 21216476..21216579 | 217..114 | 520 | 100 | Minus |
| 3L | 28110227 | 3L | 21216644..21216721 | 114..37 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:05:41 has no hits.
FMO03835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:08 Download gff for
FMO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12975-RA | 119..496 | 37..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:34 Download gff for
FMO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12975-RA | 104..481 | 37..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:59 Download gff for
FMO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12975-RA | 119..496 | 37..416 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:59 Download gff for
FMO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21216126..21216323 | 217..416 | 98 | <- | Minus |
| 3L | 21216477..21216578 | 115..216 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:08 Download gff for
FMO03835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21209226..21209423 | 217..416 | 98 | <- | Minus |
| arm_3L | 21209577..21209678 | 115..216 | 100 | <- | Minus |
