FMO03839.5prime Sequence
975 bp (975 high quality bases) assembled on 2008-07-21
> FMO03839.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGACTAC
AGCGACCTGGACCGACAGATCGAGCAACTGAAGCGCTGCGAGATCATCAA
GGAGAACGAGGTGAAGGCCCTGTGCGCCAAAGCCCGCGAGATCCTGGTGG
AGGAGGGCAACGTGCAGCGTGTGGACTCGCCAGTGACCGTGTGCGGCGAC
ATCCACGGTCAGTTCTACGACCTGAAGGAGCTGTTCAAGGTTGGCGGCGA
TGTGCCCGAGAAGAACTACCTGTTTATGGGCGATTTCGTGGACCGCGGCT
ACTATAGTGTGGAGACGTTTCTGCTGCTGTTGGCGCTGAAGGTGCGCTAT
CCGGACCGAATCACGCTGATCCGGGGCAACCATGAGTCGCGCCAAATCAC
ACAGGTCTACGGCTTTTACGATGAGTGCCTGCGCAAGTACGGATCGACGG
CCGTGTGGCGGTACTGCACGGAGATCTTTGACTACCTCAGCCTTTCGGCG
ATCATCGACGGCAAAATATTCTGCGTGCACGGCGGGCTGTCGCCGTCCAT
CCAGTACCTCGACCAGATTCGCAGCATCGACCGGAAGCAGGAGGTGCCGC
ACGACGGGCCCATGTGCGACCTGCTTTGGAGCGATCCGGAGGACCAGACT
GGCTGGGGCGTGTCGCCGCGCGGCGCTGGCTATCTCTTTGGCTCGGACGT
GGTCTCCCAGTTCAACCGCACGAACGATATCGACATGATTTGCCGTGCAC
ACCAGTTGGTAATGGAGGGCTTCAAGTGGCACTTCAACGAAACCGTCCTG
ACCGTCTGGTCGGCACCCAATTACTGCTATCGCTGCGGCAATGTAGCTGC
CATCCTGGAGCTGAATGAGTACCTGCACCGCGACTTCGTCATCTTTGAGG
CAGCTCCGCAAGAGAGTCGCGGCATTCCCTCGAAAAGCCTCAGCGGACTA
CTTTCTCGCAAGCTTTCTAGACCAT
FMO03839.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp4-19C-RH | 2159 | CG32505-RH | 458..1378 | 39..957 | 4555 | 99.8 | Plus |
| Pp4-19C-RG | 1856 | CG32505-RG | 155..1075 | 39..957 | 4555 | 99.8 | Plus |
| Pp4-19C-RF | 1977 | CG32505-RF | 276..1196 | 39..957 | 4555 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20422059..20422852 | 832..39 | 3970 | 100 | Minus |
| X | 23542271 | X | 20421868..20421995 | 957..832 | 540 | 98.4 | Minus |
| 2L | 23513712 | 2L | 7830513..7831022 | 183..692 | 510 | 73.3 | Plus |
| X | 23542271 | X | 16558892..16558962 | 248..178 | 205 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:28 has no hits.
FMO03839.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:04 Download gff for
FMO03839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp4-19C-RA | 246..1176 | 33..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:03 Download gff for
FMO03839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp4-19C-RE | 516..1446 | 33..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:29 Download gff for
FMO03839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp4-19C-RF | 270..1200 | 33..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:29 Download gff for
FMO03839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20421864..20421994 | 833..962 | 96 | <- | Minus |
| X | 20422059..20422858 | 33..832 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:04 Download gff for
FMO03839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20292891..20293021 | 833..962 | 96 | <- | Minus |
| arm_X | 20293086..20293885 | 33..832 | 99 | | Minus |
