FMO03840.5prime Sequence
1212 bp (1074 high quality bases) assembled on 2008-07-21
> FMO03840.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGAATCAAGTAT
TGTTGGCTCGCAACGCTAGTATTCATAGCCGCTGCTTCGGCGTCATATTC
TCCCGAAAAGCCTGTTCCGCCGCCCTGCAGGGCATGTACCCAGCTTGTTA
GCTCTTTCAGGGCAGGACTCGAAAGGACAAAACGCGGACACGCGGGCGGG
GACACGGCATGGGAGGAGGAAAAGTTGCGTTCGTACAAGAACAGCGAGGT
ACGGCTAGTGGAGATCCAGGAGAAGCTATGTTCGGAAGGAGAAGTGATAA
ACAAGGATCACTGCCACAACCTGGCTAACGAGCACGAGGCGCTTCTCGAG
GACTGGTTTATCCACAAACAAACAGAGAGTCCCGACCTGCAGTCATGGCT
TTGCATCGATCAGCTAACAGTCTGCTGTCCGCTGAACACCTACGGACCAG
ACTGCCTGACCTGCACCGAGTGCAATGGAAATGGAAAATGCAAAGGAGAC
GGAACTAGAAAGGGTAACGGAAAGTGCAAATGTGATCCCGGCTATGCGGG
TCCAAACTGCAACGAATGTGGACCGGAGCACTACGAATCATTCCGTGACG
AAAAGAAATTGCTGTGTACACAGTGCCATGCGGCCTGTGGGGAAGGAGGC
TGCACGGGAGGTGGTCCCAAGAGCTGCCGCAAGTGTAAGAAGGGCTGGAG
CATGGACTCGGAGGCAGGATGTGTCGACATTAATGAGTGCTTGGAGCAAC
AGCGTCCAAACCCTTGCCGACCACAGCAGTTCTGCGTGAACAATGAGGGC
TCCTTTAGTTGCCTGGAGTGTGATCGATCTTGCGATGGATGCGATGGTGA
TGGCCCTGACATGTGCAGGAAGTGTGCGGATGGCTATGAGTTGAAGGAAG
GAAAGTGTCATGATATTTCTGCGGAGCAACGCAGCAACTACGTAAGCTTT
ACGCGAATGCTCACCTACTTCGGAATGTGCGTGCCACCTGTGTCATCTTC
AGAGCTCTACTCATATTGCCTGGGGTTGCATTGTGGGGCGGCAGTGGCAG
GTACATTGCTGTTTCCGAGTACTGGATCAACTCCGAGGCAAGGAGGCGGC
CCACCACCCGAATGATACAAACAGTGGGAGAACTTATTATGAAGTCTTTA
GCAGCCTTTCTGAACATTCCGTTGGGCCGAGGGCCAGGTTATTGTCTAAT
ACTCATAACTCC
FMO03840.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11377-RA | 1583 | CG11377-RA | 80..1201 | 36..1150 | 5285 | 98.7 | Plus |
| CG11377-RB | 1221 | CG11377-RB | 80..956 | 36..912 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 102459..102907 | 36..484 | 2245 | 100 | Plus |
| 2L | 23513712 | 2L | 103005..103434 | 483..912 | 2150 | 100 | Plus |
| 2L | 23513712 | 2L | 103515..103718 | 912..1112 | 715 | 95.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:39:06 has no hits.
FMO03840.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:05 Download gff for
FMO03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11377-RA | 80..1205 | 36..1154 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:17:46 Download gff for
FMO03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11377-RA | 78..1203 | 36..1154 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:34 Download gff for
FMO03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11377-RA | 80..1205 | 36..1154 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:34 Download gff for
FMO03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 102459..102906 | 36..483 | 100 | -> | Plus |
| 2L | 103006..103434 | 484..912 | 100 | -> | Plus |
| 2L | 103516..103764 | 913..1154 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:05 Download gff for
FMO03840.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 102459..102906 | 36..483 | 100 | -> | Plus |
| arm_2L | 103006..103434 | 484..912 | 100 | -> | Plus |
| arm_2L | 103516..103764 | 913..1154 | 93 | | Plus |
