FMO03842.5prime Sequence
425 bp (425 high quality bases) assembled on 2008-07-21
> FMO03842.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGACCAAGACCAAG
GGTGAGAAAATCAACAAATCCGCGATCAACGAAGTCGTGACGCGCGAGTG
CACCATTCACTTGGCCAAGCGTGTCCACAACATCGGCTTCAAGAAGCGCG
CACCCCGCGCCATCAAGGAGATCCGCAAGTTCGCCGAGCGGGAGATGGGC
ACCACCGATGTGAGGATCGACACCCGTCTGAACAAGCACATCTGGTCCAA
GGGTATCAGGTCCACTCCATTCCGCATTCGCGTGCGCCTGGCGCGTCGCC
GCAACGACGATGAGGACTCCCCCAACAAGCTGTACACTTACGTGACCTAT
GTGCCGGTGTCCACGTTCAAGAACTTGCAGACCGAGAATGTCGAGTCCAG
CGACGACGCAAGCTTTCTAGACCAT
FMO03842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL31-RA | 509 | CG1821-RA | 73..444 | 36..407 | 1860 | 100 | Plus |
| RpL31-RB | 577 | CG1821-RB | 141..512 | 36..407 | 1860 | 100 | Plus |
| RpL31-RC | 522 | CG1821-RC | 86..457 | 36..407 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9587483..9587708 | 36..261 | 1130 | 100 | Plus |
| 2R | 25286936 | 2R | 9587774..9587924 | 257..407 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:47 has no hits.
FMO03842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:15 Download gff for
FMO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL31-RC | 79..462 | 28..413 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:33 Download gff for
FMO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL31-RB | 36..419 | 28..413 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:48 Download gff for
FMO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL31-RC | 79..462 | 28..413 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:48 Download gff for
FMO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9587476..9587706 | 28..259 | 98 | -> | Plus |
| 2R | 9587777..9587929 | 260..413 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:15 Download gff for
FMO03842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5474981..5475211 | 28..259 | 98 | -> | Plus |
| arm_2R | 5475282..5475434 | 260..413 | 98 | | Plus |
