FMO03843.5prime Sequence
1217 bp (1052 high quality bases) assembled on 2008-07-21
> FMO03843.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTGCCTAG
TGTTGATTGCCTTCAGTGGCCTCTTCTTGGCCAGTGCCCAGGCCCGAATC
CTTCCCGCGGAGGATCTCCCCTGGGAGTTGCCAGAAGTTCCGGTAGCGGT
CAACGAGATTGAACCCAGAGCAGCTGGTTGTTCAATTAAGATCCGCAGCT
CTGAGCTGAAGGATCCCCAGCCTCTGCTGATTAAATCGGACACCTCTGAA
ATCGTTGGATTCTCGGACACCGGCTATGTGGACGTGGACAAGGACAAGAC
CATCGAATTCCACTGCACCAGCAGCCTGGCTTCCCCTCTGTCTGGAAAAT
CCGTGACCGCCAAGTGCGTGGGTGGCACCACCTTCAAGATTGACGATAAG
GAGCACGATCTGTCCGCCATCAAGTGCACATCGTGGCCAGTTTTTGTGGG
CAAGAAGTCCGGATCCAGCTGCAATGGTGGCACCACGCTGATCAAGGTGG
GCTTTGAGCTCTCCGGCTCACGATTCGCAACGCAGTACGAGGTATGCTTC
AACGAGGACGAGGAGGTGACCAGGTACGTCTATCATCGCCTGGAACCGGG
AAACAACTACTATGCCACCGGAGTGGATCGCATTACATTTGGAGCCGGCG
GCTATTTCGCGGGTAAGAATGTGGACAAGCTATACACGCAGGCTGTTCAG
AAGGAGACCATCGACAAGGAGCTGGACATGGATTCATCCCGTTTCTTTGA
CTCGGCCAAGAACATCTTCCTGGCCCGTGGTCACATGGGTGCCAAGGCTG
ACTTCGTATTTGCCCCGGAGCAGAGGGCCACCTTCCTGTTCATCAACGCT
GCTCCTCAGTGGCAGACCTTCAATGCTGGTAACTGGGCTCGCGTGAGGAC
GGAGTTCGTGCCTGGGTGGCCAAGGAGACAGCACGTGGAGTGCTGGACGG
GAGTCTGGGGTGTTACCACGCTGCCCAACAAGAATGGGAACAGAGCACTC
TATTTGTCCCACGATAACACGGCAACGTCTGATTCAGTTCCCAAGCTATA
ACTTCGAGTGGTATCGATCATCCACAAGACGCATCGGTTCTGGATCGCGT
CACATCCCATTGGTTGGAGAATCAGCGGACCTACCTCCTGGCCGAGCTCA
CGCACGGATCACTGGAATCCCTGGAAGAAATAACCGAACTCTACCACGCC
GGGGTTATATCTCTTAC
FMO03843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3819-RB | 1422 | CG3819-RB | 15..1065 | 36..1075 | 4920 | 98.7 | Plus |
| CG3819-RA | 1328 | CG3819-RA | 15..1065 | 36..1075 | 4920 | 98.7 | Plus |
| CG6839-RA | 1325 | CG6839-RA | 746..966 | 765..982 | 440 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18920801..18921701 | 1063..172 | 4050 | 98.4 | Minus |
| 3L | 28110227 | 3L | 18921957..18922094 | 173..36 | 690 | 100 | Minus |
| 3L | 28110227 | 3L | 18918680..18918810 | 765..895 | 400 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:55:29 has no hits.
FMO03843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:16 Download gff for
FMO03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3819-RA | 3..1065 | 28..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:56 Download gff for
FMO03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3819-RA | 1..1063 | 28..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:19 Download gff for
FMO03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3819-RA | 3..1065 | 28..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:19 Download gff for
FMO03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18920814..18921699 | 174..1050 | 98 | <- | Minus |
| 3L | 18921957..18922106 | 28..173 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:16 Download gff for
FMO03843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18913914..18914799 | 174..1050 | 98 | <- | Minus |
| arm_3L | 18915057..18915206 | 28..173 | 97 | | Minus |
