FMO03845.5prime Sequence
1241 bp (1062 high quality bases) assembled on 2008-07-21
> FMO03845.5prime
CGTATAGCATACATTAAACGAAGTTATCAGTCGACATGCACAAGAACACC
ATTTGGTACGGAGCTGTGCTCCTTGTCGTCTACTTCACGCTGGTGTTTTG
CGAGGAGACGAAGAACGAGGAGGCTCCGGCGCAATTGGATAACCAAGTGG
AGGACACATGGGAAAATCTCGGCCGGGAGCTAATGGAGTTTGAGGGACGT
ACTCGACGCCATCGTCACCACATGTTCTGGTATCGTCACCTATGGCCCAT
TGCCATTGCTTACTGGATCAAGGTGAAAGTGGTGATCGTATCCTTCTTTG
TGGGCAGTGCCATCTACTTGGGTCTGCGCTATTTCTGGCCCCATGCCAGG
TGCAACCAGGAGATCATCCTTGATCATCCTCCTTCGTCTTTCTCTCATCA
CGATCACATTCCCTACTCTCTGGACCACGATCACTCGGAGCACTATGATG
CTCCTTCATCTTTTGACTCCGGCGCCAGTTTCGAGCCCTATTCCGGATAC
AGCAGCTATGCTGGATCGGACATTGTCTCTGATGTGCATGGCGACTACCA
TAGCGAATCTCCCTCTGGACCAAGTGGCCCATCTGGTCCCGTAGACACGC
GCCGTCGCGGACGCCGTAGCGCTGCAGATAACGCCCATTTGATCCAAGAT
GAGCAGGAGGAAGAGCATGTGGAGATTGTGGATGAGGAAATTTCAGAGAG
CGTGGCTCGCCAAATGCCCGCCGAAGAGCAGATTGCCGATTTTATGTTCG
CCTTTTTGGGCCTGGACTCAAAGGCGTGCCGACGCCGATTTGTCTGCGAA
ATGGAGTTTAGATCCAAGTTGAATCCCTTGACCAGCATGGCTTTCCGCAT
TGTGGGTCGCGGTTTCTTTGAGAAGTACACCAATGCCAGAAATCCTATGG
CCAGGGCCACCAGCTTTGGCGAGTGTGCTGCCGTCAATCCCGAGTGCATT
TTCGTGAGAACGACACGGCGAGGAAAATCCGGAGTCGGAGGCACACAGGA
GGCTGATCAGCAACAGAGGAGCAGCAGTCACGAGATCTGCCGCTGAGATT
CCAGAATGGAGATCACCTCCAAGCGAAAGGCGACGAGCAGCACAAGAATC
GCAGCCTCAGCTCCATGGCGAGCCTTCTGAGTGCAGGCAGCTCTGAACCA
TTCGTTGGCGCCGGCCAGGAATGGCCTAATCTATTCTAAATCTAGAATCA
TATCCACCAGGCTAAGGAGAATACCTGTGTGCGTGGACATA
FMO03845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12920-RA | 1307 | CG12920-RA | 84..1178 | 35..1116 | 5095 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10070129..10070480 | 380..731 | 1760 | 100 | Plus |
| 2R | 25286936 | 2R | 10070540..10070938 | 731..1116 | 1315 | 94.5 | Plus |
| 2R | 25286936 | 2R | 10069189..10069385 | 35..231 | 985 | 100 | Plus |
| 2R | 25286936 | 2R | 10069920..10070067 | 232..379 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:42:44 has no hits.
FMO03845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:47 Download gff for
FMO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12920-RA | 80..1195 | 28..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:25:06 Download gff for
FMO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12920-RA | 77..1192 | 28..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:30 Download gff for
FMO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12920-RA | 80..1195 | 28..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:30 Download gff for
FMO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10070129..10070479 | 380..730 | 100 | -> | Plus |
| 2R | 10070540..10070955 | 731..1130 | 94 | | Plus |
| 2R | 10069185..10069385 | 28..231 | 98 | -> | Plus |
| 2R | 10069920..10070067 | 232..379 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:47 Download gff for
FMO03845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5956690..5956890 | 28..231 | 98 | -> | Plus |
| arm_2R | 5957425..5957572 | 232..379 | 100 | -> | Plus |
| arm_2R | 5957634..5957984 | 380..730 | 100 | -> | Plus |
| arm_2R | 5958045..5958460 | 731..1130 | 94 | | Plus |
