FMO03847.5prime Sequence
747 bp (747 high quality bases) assembled on 2008-07-21
> FMO03847.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGGATTAAT
GAATGGCTTTCTGCTTTTGTTCGCCTGCAATTTGCTGTTGGCTGTGCACG
TATCTGCCAATAAGCAGCAGAAAAATCAAAACCAAGAAATCTGGGAACAA
GACCTTTCGGACACCTTTAAAATCGAGGGCAGCGACCAGGGCATTCAAAA
GGTTAACCTCAAGTGCGGAGCGGACTCCATGAACGTGGTGCTGGAGACGG
AGAAGCCTTTCATGGGTGTGATGTACACTCGTGGCAGCTTCTACAAGCAG
TCTGCGCCGTGCTTCATGAAGCCATCTTCCAGCCAGGGATCCCGCACAAT
GGAGATGAACTTCCAGCTGGACCAGTGCCAGACGATCCGGGATGGTGATC
TCTACACCAACATCGTGGTGATCCAAAACGACCCAGAGCTGATCACACCC
GGAGATTCGGCCTTCTCGCTGGAATGCGACTTCCGGCAGCCTCGCAACCT
GGACGTGGAGGCCAGCATGCAGGCCAGGGACAGAGTGGCCACTGGTTCGA
AAATCACACTCACAAGTCCTGATCCCGCGGCACCCACGGAACACCTACAT
AACTCGGTGGTCAGCAACAGCGACTCGGTCGCATACATACCAAAGTTCAG
TCGGCCAAATAGAACCATACACCTGGGCTCCGTGGAGGAGGTGACGCTGC
CATCGTCCTCCCAGGCGCGAGATGAGCTCGCAAGCTTTCTAGACCAT
FMO03847.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10005-RA | 1055 | CG10005-RA | 110..802 | 37..729 | 3465 | 100 | Plus |
| CG10005-RB | 880 | CG10005-RB | 110..607 | 37..534 | 2490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11976099..11976497 | 533..135 | 1995 | 100 | Minus |
| 3R | 32079331 | 3R | 11975519..11975718 | 729..530 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 11976989..11977088 | 136..37 | 500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:41 has no hits.
FMO03847.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:43 Download gff for
FMO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10005-RA | 103..802 | 29..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:22:30 Download gff for
FMO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10005-RA | 96..795 | 29..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:51 Download gff for
FMO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10005-RA | 103..802 | 29..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:51 Download gff for
FMO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11975519..11975714 | 534..729 | 100 | <- | Minus |
| 3R | 11976099..11976495 | 137..533 | 100 | <- | Minus |
| 3R | 11976989..11977095 | 29..136 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:43 Download gff for
FMO03847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7801821..7802217 | 137..533 | 100 | <- | Minus |
| arm_3R | 7801241..7801436 | 534..729 | 100 | <- | Minus |
| arm_3R | 7802711..7802817 | 29..136 | 97 | | Minus |
