FMO03849.5prime Sequence
1208 bp (1072 high quality bases) assembled on 2008-07-21
> FMO03849.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGATCAAAAATGAAC
AACGTCCCCTTAATTTTGAAAAATGTCCGGAATCTGATGATGAGCTCAAG
AAACGGTTGGAGATAGAAAAATTAATTAATAAAAACATCGACAAAAATAT
TAGTTTTGATGTACTTGTGAAGTTATCCCTGGCGCCTTACGGATTGGTTA
ATGACGATTTTAGAAGGATTTTATGGCCTCAGTTGGCAGGAGTCGACATT
AACCATTTAGGACAAGCTCCAACGCTCGATAAGTTCCAGTGCCATCCAGA
ATACAATCAAGTGGTGTTAGATGTTAATCGTTCTTTAAAACGATTTCCAC
CAGGAATTCCGTACGAGCAACGAATTGCACTGCAAGACCAACTTACTGTT
CTGATTTTGCGAGTAATTCAAAAGTATCCTAACTTGAGGTATTATCAAGG
CTACCATGACGTGGCTGTAACATTTCTGTTAGTGGTTGGCGAAGAAATCG
CATTTGCAATAATGGAACAGCTCTCTACAACACATTTTTCTGAATGTATG
CAGGAGACTATGGAGGCCACGCAAAGGCGACTTATGTTTATTTGGCCTAT
CATTAAGTTTGAAAACCCAGAACTTTATCAGTTCTTGCAAAACTCGACTG
TGGGAACTTTGTTCTCTTTGCCGTGGTATTTGACTTGGTTCGGACATAGT
TTAACATCTTATAGAACCGTAGTCCGCTTGTATGACTATTTCCTTGCATC
GCCTATTTATACATCAATCTTTGTAACAGCAGCGATTTTACTTTATCGAT
CAGATGAAATTCTAAAGGAGGACTGTGATATGGCATCGGTGCATTGTCTC
TTATCAGTGATACCAGAAGATTTACCATTTGAGGACCTTTTGAAAACATC
CAGTTCGCTTTTAAATAAATATAGCCTAACACTTATAGAGAAAGATGTTG
AAGAACTTATTTGTCAAGAAAGGAGGAAAAGGAAAACCGATGAAGCTTTA
ATCGTAAAAAGACGTCAACGGTCACATCGAATAGATCTATCATAACGAAA
TGGCTTTCAAATATTTACAGCAAGGCGGGTGAAATTGACAACGGCATTTC
TATTGGAATGGGGGTATGGTGCTATTATTCACAATACAGTATTGGGCGGC
AGGATAAAGGCTAGGCTTTGAGACTCGTTGGGCCCGGGCCAGGTTATGTG
CTGATATC
FMO03849.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17883-RA | 1625 | CG17883-RA | 328..1454 | 35..1153 | 5225 | 98.1 | Plus |
| CG17883-RC | 1619 | CG17883-RC | 328..1448 | 35..1153 | 5115 | 97.5 | Plus |
| CG17883-RD | 1604 | CG17883-RD | 328..1433 | 35..1153 | 4900 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4672278..4673062 | 75..859 | 3925 | 100 | Plus |
| 2R | 25286936 | 2R | 4673113..4673223 | 859..969 | 555 | 100 | Plus |
| 2R | 25286936 | 2R | 4673277..4673443 | 970..1129 | 395 | 88 | Plus |
| 2R | 25286936 | 2R | 4672180..4672221 | 35..76 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:10:06 has no hits.
FMO03849.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:56 Download gff for
FMO03849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17883-RA | 322..1391 | 28..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:40 Download gff for
FMO03849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17883-RA | 318..1387 | 28..1092 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:52 Download gff for
FMO03849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17883-RA | 322..1391 | 28..1092 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:52 Download gff for
FMO03849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4672174..4672219 | 28..74 | 93 | -> | Plus |
| 2R | 4672278..4673062 | 75..859 | 100 | -> | Plus |
| 2R | 4673114..4673223 | 860..969 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:56 Download gff for
FMO03849.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 559679..559724 | 28..74 | 93 | -> | Plus |
| arm_2R | 559783..560567 | 75..859 | 100 | -> | Plus |
| arm_2R | 560619..560728 | 860..969 | 100 | -> | Plus |
