Clone FMO03852 Report

Search the DGRC for FMO03852

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:38
Well:52
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG12721-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03852.5prime Sequence

568 bp (568 high quality bases) assembled on 2008-07-21

> FMO03852.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCCAAGATATTGC
CCACCGATGGCATCTGGATACCGGAGTCGTGCAGCTTTCCGGAGGATGTG
ATGATCGATATGATGGAGGGACTATTCCGCGATGTGCCAAACCTAACGCA
CAAGGAGTACCTGGCGCTGGCCGACCTGCAATCTAGATGGATGGCGAAGC
TGGCCAACCGACAGCCGGAATCGAATCCCCTGCCGCCAAAGCCAAAGAAG
CGTAAGAAAATCGCTCCAAAGAAGCAGGACCAGCCTGTCGAGGAGAAGGG
CAGCGAAGTCGACATCTACGATGTGGACGACAACGAGATGGTCAACAATC
GCATCTACATTCCGCGACTGCGTTCCGCTTGGAGAGCTCGCTATTTCAAC
ATTATGATGCGCGCCTTTGTCATCAAACGGGGACTATTGAATAAGCACAT
TAACTGGCAGATTCTCGACAAGATCATGGCAGCCCCCGACGCAGAGGGAC
AAGCCGAGCTTCAGGCGTTTGTTGACAAAGTGGTCGCAGGCCAGGAAATG
GCAAGCTTTCTAGACCAT

FMO03852.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:09:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG12721-RA 811 CG12721-RA 88..604 34..550 2585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:09:06
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12072215..12072731 550..34 2585 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:09:07 has no hits.

FMO03852.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:21 Download gff for FMO03852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 88..604 34..550 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:00 Download gff for FMO03852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 85..601 34..550 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:23 Download gff for FMO03852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12721-RA 88..604 34..550 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:23 Download gff for FMO03852.5prime
Subject Subject Range Query Range Percent Splice Strand
X 12072215..12072731 34..550 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:21 Download gff for FMO03852.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11966248..11966764 34..550 100   Minus