Clone FMO03853 Report

Search the DGRC for FMO03853

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:38
Well:53
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG16865-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03853.5prime Sequence

795 bp (795 high quality bases) assembled on 2008-07-21

> FMO03853.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCCAAAGTAGT
GTCGCGCAGTATCGTCTGCTCCGATACCAAGGATCAGGAGGAGTACAACG
AGGAAAAGCCGCTAAACATTTACTACTGTCTGTGCAACAAGATGGCTCTG
ATTCTGGATTGCACCCTCGAACAGTTGCCGCTACGAGAGGTGGACAACGC
CCGTGTGATAAACGCCAACGACCATGCCAACAAACTCACCCACAATCCCA
CACCGAGGATGGTCTACATCAAACGCAAGAGCAGGGGCAATGGGATCGAG
AAGCAGTACCGCTACAAGTGCCGAAGCTGCAGTCTGCCGCTTTACTATCG
CCACAGTCCCGACTCCCACGTAACCTTCGTCATGTCCAATGCCCTAATCC
GCAACAAGGGTGAGAGTCCTCTCACACAGCTGCTGAATTCGGAGATCAAG
GGCAGTTTCAAGGCACCGGCTGCCAAGCCAGCGACTTCCGCCGGTCCAGA
CGATTCGGGTATTGTGGATGCCAGTGGCAAGAAGGTCGTCGTCACCAGAC
ACACGAAGAACATGGGCAAGTTCAGCTCGGTCACGGTGTCTACCATCGAC
GAGGAGGAGGATGAAATCGAGGCGCGCGAGATCGCAGACAGCTATGCGAA
CAACGCAAGGATTATCGAGAAGCAACTGCAGCGCAAAGGCGGAAAATTGA
GCGATGTGGGCATCAAAACCAAGACAGAGGACGCACCTCCGCCGCAGAAG
AAGCAGCGCGGCACGCTACTGGAAAGAGCAAGCTTTCTAGACCAT

FMO03853.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG16865-RB 1549 CG16865-RB 123..864 36..777 3710 100 Plus
CG16865-RA 915 CG16865-RA 123..864 36..777 3710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13812050..13812357 317..624 1540 100 Plus
2L 23513712 2L 13811825..13811986 157..318 810 100 Plus
2L 23513712 2L 13812478..13812631 624..777 770 100 Plus
2L 23513712 2L 13811644..13811765 36..157 610 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:23:56 has no hits.

FMO03853.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:15 Download gff for FMO03853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 123..864 36..777 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:18:23 Download gff for FMO03853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 119..860 36..777 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:38 Download gff for FMO03853.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16865-RA 123..864 36..777 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:38 Download gff for FMO03853.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13811826..13811986 158..318 100 -> Plus
2L 13812052..13812357 319..624 100 -> Plus
2L 13812479..13812633 625..782 97 -> Plus
2L 13811644..13811765 36..157 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:15 Download gff for FMO03853.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13811644..13811765 36..157 100 -> Plus
arm_2L 13811826..13811986 158..318 100 -> Plus
arm_2L 13812052..13812357 319..624 100 -> Plus
arm_2L 13812479..13812633 625..782 97 -> Plus