FMO03856.5prime Sequence
546 bp (546 high quality bases) assembled on 2008-07-21
> FMO03856.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGCCGAAGCCACTGTT
AAATTCGTGCTGTCTGTGCCAATCGACCCGGAATGGCTCCGTTATCTCGG
GCATACTGGCGATAGTCCTGTCGATCATCACCATCGTGGTGATCTTCACG
ACGCGGGTGCACTTCAAGACGATAATCTTTGACTTCATCCCCAATGACAT
TGTTAAGATAATTCTAGTCATCAATTTGTGCATGACGATCTTGATATCGC
TGCTCATGATCATTGGTGCCCTGAAGCGGAACCACTACCTGATGGTTCCA
TGGGTGGTCCTCGGCATTATGATTGCCATCGGTCTGCTGATCTCCGTCAT
CTACACGGGCATCGTCTTCTTCATCGACGGCTACGTGCTGACGGGAGTCC
TCTGGCTGATCTTCGGCCTAATTGTCTGCGCGATTATGACCTATTGCTGG
TGCGTGGTCTATAGTGAATACGCCAACCTGTCCGAGGAGAACGAGCGCGG
TCGTTACAACAAGCAGCCGTACCGTCGCGCAAGCTTTCTAGACCAT
FMO03856.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10311-RB | 1086 | CG10311-RB | 245..739 | 34..528 | 2475 | 100 | Plus |
| CG10311-RA | 966 | CG10311-RA | 245..739 | 34..528 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16352089..16352331 | 276..34 | 1215 | 100 | Minus |
| 3R | 32079331 | 3R | 16351878..16352033 | 430..275 | 780 | 100 | Minus |
| 3R | 32079331 | 3R | 16351133..16351231 | 528..430 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:21:37 has no hits.
FMO03856.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:15 Download gff for
FMO03856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10311-RA | 245..739 | 34..528 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:17:48 Download gff for
FMO03856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10311-RA | 241..735 | 34..528 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:11 Download gff for
FMO03856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10311-RA | 245..739 | 34..528 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:11 Download gff for
FMO03856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16351133..16351230 | 431..528 | 100 | <- | Minus |
| 3R | 16351878..16352031 | 277..430 | 100 | <- | Minus |
| 3R | 16352089..16352331 | 34..276 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:15 Download gff for
FMO03856.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12176855..12176952 | 431..528 | 100 | <- | Minus |
| arm_3R | 12177600..12177753 | 277..430 | 100 | <- | Minus |
| arm_3R | 12177811..12178053 | 34..276 | 100 | | Minus |
