FMO03857.5prime Sequence
1161 bp (204 high quality bases) assembled on 2008-07-21
> FMO03857.5prime
TAGCATACATTATACGAAGTTATCAATCCACATGAATCCGTGTACTTCAT
CGCCCCCACGGATGCCACGTGGCTCTGGATCCGTGGAAAACTGCAACCTG
GAATCTGACGGCCTGCAACTGCTCGAGATGGCTGGAAAGGAGGACTACGA
GGAGCTGCGCGACCTTCTGCAGTCGTGGGATGTCGCCGATCTGCTTCCTC
ACCTGCAAGATGAAGCCATTAACGTGGACGAGCTGCAGATGATCAAACGT
CATCATCTGTCCGAGTTGCTGCGAAACTTTCGCTTTGGAACCCGCATTCG
CTTCGAGCATCACTTGGAGCGCTGGCGCCGCTGGCTGAACGTACCGCTCC
AAGGCGCCCAGGGCCAGGGGTCGAGCCACTGCTCCGGCTGTCGCTGTCCG
GAGATTCTGGGCCAATCGCAATGTCAGGAGCAATCGCCGTTGCAATGGAA
CAGCCGTCAGAGCATGAAGAATTGCACAAGCCTGAAGATCTGGTCAAGAC
AATACCAGCAGAATCGCTGGTGGCCCTCATTGATCCCAGGGAAATGTCAG
TTCCCTTTCCATTGCCTTTGGTCCATCCGCCTGCGCAGATAACCGACGAC
ATAATGATGGTCAAACAGGAGCTGATGCCGATGCACCAAAACTAGGAAGC
CTGAAGCTGTATTGGCTGCTGGCTCTTCACGAGGAACCTCACGCAACAAG
GACGATGCATCTGCCACTCCTGACCAAGAAGTTAGCATTTTGGGCATTCT
GCGATCCTCGGGTATGAAAGCCCATAGCTTGCTGGATCGTATTGGCCAGA
CGATCCGCTGGACGCCGTGCAGCGCCTTTTGCTCATCCAACTAGTGTGCT
GCTACTACGAAGAGAACCAGATGCAACTGACCCTGCAGAGGAGTCACTTG
CTGAACGCGAAGATTATTGCAGCTTTTCCCGCAGGAACAGCTCAGCTAAT
ACCTCACGAAGAGAATGGGTAAGATCTACATGAGATTCACACATTGAAAC
GAACCAAGAGGCTTCAGTTCGTCTCGCCAGTACCTCAACCACGCCGTTTC
TAGCTGATATATTCGATTTCATTCGGATCCAGGACCCAATGCTACTGCTA
GTGTGAAGTTAGACCGGGGACCGAATCTCTCGTTCCCCAATCGCTCCCGA
AGGCAACTCTG
FMO03857.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1888-RD | 2535 | CG1888-RD | 1233..2345 | 32..1147 | 4505 | 94.2 | Plus |
| CG1888-RC | 4527 | CG1888-RC | 56..1168 | 32..1147 | 4505 | 94.2 | Plus |
| CG1888-RB | 2400 | CG1888-RB | 1098..2210 | 32..1147 | 4505 | 94.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9545399..9546298 | 1107..208 | 3370 | 93.6 | Minus |
| 2R | 25286936 | 2R | 9546726..9546903 | 209..32 | 860 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:16 has no hits.
FMO03857.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:53 Download gff for
FMO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1888-RB | 1087..2056 | 19..990 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:26:05 Download gff for
FMO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1888-RA | 41..1010 | 19..990 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:57 Download gff for
FMO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1888-RB | 1087..2056 | 19..990 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:57 Download gff for
FMO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9546726..9546914 | 19..209 | 96 | | Minus |
| 2R | 9545516..9546296 | 210..990 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:53 Download gff for
FMO03857.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5433021..5433801 | 210..990 | 96 | <- | Minus |
| arm_2R | 5434231..5434419 | 19..209 | 96 | | Minus |
