Clone FMO03858 Report

Search the DGRC for FMO03858

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:38
Well:58
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11777-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03858.5prime Sequence

535 bp (535 high quality bases) assembled on 2008-07-21

> FMO03858.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTGTAACGCTGC
ACACCGACGTGGGTGACCTCAAAATAGAGCTCTTCTGCGATGCCTGCCCC
AAGGCCTGCGAAAATTTCCTCGCCCTGTGTGCGAGCGACTATTACAGCGG
CTGCGTCTTCATCCGAAACATCAAGGGATTTATTGTCCAAACTGGAGATC
CTACGAACACCGGAAAGAATGGACAGTCCATTTGGGGCCAGAAGTTCGAC
GACGAATTCAAGGAGACCATTAAGCACACTGATCGAGGAATGGTTTCCAT
GGCCAACAACGGACCGAACGCCAATGCCAGCCAGTTCTTCATTACCTATG
CCGCCCAGCCAAATCTTGACTTGAAGTACACGCTCTTTGGCCGTGTGATC
GATGGATTCGATGCCCTGGATGAACTGGAGAAACTGCCCGTCAATCCCAA
GAACTATCGTCCCCATGTGGACAAGAAGATCAATGGAGTAACTATACATG
CCAATCCTTTGGCGACGGCAAGCTTTCTAGACCAT

FMO03858.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11777-RA 701 CG11777-RA 19..501 35..517 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10469199..10469443 273..517 1225 100 Plus
2R 25286936 2R 10468700..10468937 37..274 1190 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:31:38 has no hits.

FMO03858.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:43 Download gff for FMO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..501 35..517 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:21 Download gff for FMO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 16..498 35..517 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:27 Download gff for FMO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11777-RA 19..501 35..517 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:27 Download gff for FMO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10468698..10468937 34..274 99 -> Plus
2R 10469201..10469443 275..517 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:43 Download gff for FMO03858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6356203..6356442 34..274 99 -> Plus
arm_2R 6356706..6356948 275..517 100   Plus