FMO03861.5prime Sequence
391 bp (391 high quality bases) assembled on 2008-07-21
> FMO03861.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGATGATCCAG
AAAACTCAGTGGATAGGCCCACAGACGACGGAGATGCCGGCAAACCGGAA
AAAATGTTTACGCTGAAGAAATGGAACGCAGTTGCAATGTGGAGTTGGGA
TGTGGAATGCGATATCTGTGCCATTTGCCGTGTTCAAGTTATGGATTCCT
GCCTTCGCTGCCAGGCGGACAACAAGCGGGATGTGATGGGTCGCCAGGAC
TGCGTGGTGGTTTGGGGCGAGTGCAACCACTCCTTTCACCACTGCTGCAT
GTCGCTGTGGGTCAAGCAGAACAACCGATGCCCGTTGTGCCAGCAGGAGT
GGTCCATTCAGCGCATGGGAAAAGCAAGCTTTCTAGACCAT
FMO03861.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Roc2-RB | 758 | CG8998-RB | 268..609 | 32..373 | 1710 | 100 | Plus |
| Roc2-RA | 584 | CG8998-RA | 172..513 | 32..373 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11652905..11653084 | 373..194 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 11678206..11678368 | 194..32 | 815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:00 has no hits.
FMO03861.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:55 Download gff for
FMO03861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..516 | 32..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:28:31 Download gff for
FMO03861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 170..514 | 32..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:12 Download gff for
FMO03861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Roc2-RA | 172..516 | 32..377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:12 Download gff for
FMO03861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11678206..11678368 | 32..194 | 100 | | Minus |
| 2R | 11652901..11653083 | 195..377 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:55 Download gff for
FMO03861.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7540406..7540588 | 195..377 | 98 | <- | Minus |
| arm_2R | 7565711..7565873 | 32..194 | 100 | | Minus |
