FMO03864.5prime Sequence
764 bp (764 high quality bases) assembled on 2008-07-21
> FMO03864.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGTCCGAAAAGAAGCGA
TTTGTGTGCGTTAATTGTGGACACAGAGTAAAAGAACTGTTCAAGAAATA
CAGCAATACTATGAAAACCACGCAATGCGACAACTGTCACCAAATCACGG
ATAAATACATTGAGTTCGAGGAGTTTATCATATTAATAGATGCACTGCTA
TTAGATTCGTGCGCCTTCCGGCACATTATATACAATGGCGACTTTAAGCT
CTACTGGAAGGTTTCGCTGGTGGTGCTGCTCCTGGAATCCTTTGCGCTGT
GCCGCCAAAAACTGCCCGACCCTCCGAATGCCTCTTTGCATGTCCACGAA
AAGGGCTTTTACACATATACCCTTCAAAACATGGGAGATTACATGTTCAT
GACTCTATTGCTGCTAATAATCACCGCCACTCTGAGTATTGATTGGATGC
AGAAAATAGGCTTTCGAAATTTTTCTTTAATTATACTCAAAGTGGTGCTG
ATATCCAACCTGTCCAAGTTCTTCCTTCTGCCCATTTTGGTGTGGCGAAA
TAACACGACCGTTTTTGGCCGGAACTTGCACCATCTTCTGGTCATGGGAC
ATCACCTCTGCTCCCTGGTCCTCGCCTACCAGGCAGTCGGAGCCACTAGG
AAGAACCTTCGATGGTGGGCTCTAACTTTGGTTGTTATAGCTTTCGCCTT
CAAGGAAACCGCGAGGCAGTTTGTATCACTAGTGGTGGAGGACAATGCAA
GCTTTCTAGACCAT
FMO03864.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32442-RA | 934 | CG32442-RA | 93..806 | 33..746 | 3570 | 100 | Plus |
| CG32442-RB | 942 | CG32442-RB | 93..814 | 33..746 | 3480 | 98.9 | Plus |
| CG32442-RC | 930 | CG32442-RC | 93..802 | 33..746 | 3450 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21528346..21528706 | 746..386 | 1805 | 100 | Minus |
| 3L | 28110227 | 3L | 21528770..21528910 | 387..247 | 705 | 100 | Minus |
| 3L | 28110227 | 3L | 21528966..21529085 | 248..129 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 21529145..21529241 | 129..33 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:18 has no hits.
FMO03864.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:15 Download gff for
FMO03864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 93..806 | 33..746 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:19:34 Download gff for
FMO03864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 66..779 | 33..746 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:44 Download gff for
FMO03864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32442-RA | 93..806 | 33..746 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:44 Download gff for
FMO03864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21528346..21528704 | 388..746 | 100 | <- | Minus |
| 3L | 21528770..21528908 | 249..387 | 100 | <- | Minus |
| 3L | 21528966..21529085 | 129..248 | 100 | <- | Minus |
| 3L | 21529146..21529241 | 33..128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:15 Download gff for
FMO03864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21521446..21521804 | 388..746 | 100 | <- | Minus |
| arm_3L | 21521870..21522008 | 249..387 | 100 | <- | Minus |
| arm_3L | 21522066..21522185 | 129..248 | 100 | <- | Minus |
| arm_3L | 21522246..21522341 | 33..128 | 100 | | Minus |
