FMO03865.5prime Sequence
1216 bp (1055 high quality bases) assembled on 2008-07-21
> FMO03865.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGTTAGTA
TCGATTTGGGCATTGGCAGCTCTTTGCCTTTGCCTTGGACAAGTGGCCAG
CAGCGAGAAGCTGCTTAACTGCTACTGGGGCACGTGGGCCAACTATCGTC
CCGGAGATGGAAAGTTCACACCCTCCGATATCGATCCCTCCCTGTGCACC
CACATCAGCTACACCTTTTTCGGAATCAGCGATGCCGGCGAGTTCAAGTC
CCTGGACACCTGGCTGGACATGGACGATGGTCTGGGCTTTATTAGCCAGA
CAATTGCTCTGAAGCAGCGCAATCCAAACCTCAAGATTTTGGCGGTGGTT
GGTGGTTGGAATGAAGGTTCCACCAAATACTCGGCCATGGCAGCCGATCC
TGCCAAGCGTGCCACCTTCGTCTCCACTTCCCTGGCCTTCATTCAGCAGT
ATAGCTTTGATGGCTTGGATTTGGATTGGGAGTACCCTGGTCAGCGCGGA
GGCAGTGAAGCGGATCGCGAGAACTTTGTTACTCTGCTGCGCGAGATTAA
GGAGACCTACGATCAGTATGGCTTGGAGCTGGGTATTGCTGTCGGTGCGT
CCGAGAAATCGGCCAGCATCTCATACGACATTCCGGCCATTTCGCAGCAC
TTGACTTTCATTAACGTTATGACCTACGACTTCCACATGGCTCTGGATGG
CTATCTGGGTCTCAATGCTCCTCTGCCCGAAGTCGCCGAATCTATTGATT
ATTGGCTTTCTCATGGTGCTCCCGCTGAGAAGCTTATCCTTGGCATTGGC
TTCTATGGCCACAGCTACCAGATGTCCGATAGCTCACAGAACTGGCCCGG
TGCTGCGTGCATTGGTCCCGGAACTGCTGGCGTCTACACGCGGGAGAACG
GATTCCTGGGCTACCACGAGATCTGCCTGAACAACTGGCAAACCGTGTTC
GATCAGGAGACGGTGCTCCATATGCCTTCCAGGTGATCAGTGATCGGCTA
TGACATCCCGAAGCATCCAGCTGAGATGCAGTTGGTCGAGTCCCGCATCT
GGGTGGTGCATGATGTGGTCATCGAGACGATGATTCCGTTGTCTGTGCGC
GAGTCTATTCATGCTGAGAAACATTGAATCGTGTCTCTTGGCAGGAGTGA
ATGGAGATGCGAAGCGCTCACGTAGGAAAAAAAGTTTCATTCCGCTCTCC
AAGGGGTGGCTCTCCA
FMO03865.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht4-RA | 1473 | CG3986-RA | 30..1161 | 39..1156 | 5140 | 97.9 | Plus |
| Cht9-RA | 1161 | CG10531-RA | 84..643 | 117..682 | 320 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21066416..21066687 | 556..285 | 1360 | 100 | Minus |
| 2R | 25286936 | 2R | 21065783..21066096 | 1070..765 | 1170 | 97.5 | Minus |
| 2R | 25286936 | 2R | 21066149..21066360 | 768..557 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 21066748..21066925 | 286..109 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 21066989..21067058 | 108..39 | 350 | 100 | Minus |
| 2R | 25286936 | 2R | 21068979..21069131 | 269..117 | 255 | 77.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:01:50 has no hits.
FMO03865.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:28 Download gff for
FMO03865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 26..1126 | 31..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:16:05 Download gff for
FMO03865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 26..1126 | 31..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:19 Download gff for
FMO03865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht4-RA | 26..1126 | 31..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:19 Download gff for
FMO03865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21065726..21066095 | 766..1122 | 95 | <- | Minus |
| 2R | 21066152..21066360 | 557..765 | 100 | <- | Minus |
| 2R | 21066416..21066686 | 286..556 | 100 | <- | Minus |
| 2R | 21066749..21066925 | 109..285 | 100 | <- | Minus |
| 2R | 21066989..21067062 | 31..108 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:28 Download gff for
FMO03865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16954494..16954567 | 31..108 | 94 | | Minus |
| arm_2R | 16953231..16953600 | 766..1122 | 95 | <- | Minus |
| arm_2R | 16953657..16953865 | 557..765 | 100 | <- | Minus |
| arm_2R | 16953921..16954191 | 286..556 | 100 | <- | Minus |
| arm_2R | 16954254..16954430 | 109..285 | 100 | <- | Minus |
