FMO03868.5prime Sequence
469 bp (469 high quality bases) assembled on 2008-07-21
> FMO03868.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCACATACTACT
TTGTTATTGTGGGTCAAAATGATAATCCCATTTACGAGAAGGAATTCAGC
ACCGTGAACAAGGAACTAAGGAAAGAGGACCACAGGCACCTCACCCAGTT
TATTGCCCATGCCGCCTTGGATTTGGTGGATGAGCACAAATGGAAGACGG
CCAATATGCAGCTGAAATCCATTGATAGATTCAATCAGTGGTTTGTTTCG
GCCTTCATCACAGCCAGCCAAATACGATTCATCATCGTTCATGACAACAA
AAACGACGAGGGAATCAAGAACTTCTTTAACGAGATGTATGACACGTATA
TCAAAAACTCCATGAATGCCTTCTATCGCATCAACACACCCATTAAATCT
CCGATGTTTGAGAAGAAGTCGGAGATCTTTGGTCGGAAGTATTTGTTATC
AGCAAGCTTTCTAGACCAT
FMO03868.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trs20-RA | 575 | CG5161-RA | 51..467 | 35..451 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16131109..16131439 | 451..121 | 1655 | 100 | Minus |
| 3L | 28110227 | 3L | 16131496..16131582 | 121..35 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:16 has no hits.
FMO03868.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:02 Download gff for
FMO03868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)72Dh-RA | 43..474 | 26..460 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:39 Download gff for
FMO03868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5161-RA | 14..445 | 26..460 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:58 Download gff for
FMO03868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trs20-RA | 43..474 | 26..460 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:58 Download gff for
FMO03868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16131102..16131438 | 122..460 | 98 | <- | Minus |
| 3L | 16131496..16131580 | 37..121 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:02 Download gff for
FMO03868.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16124202..16124538 | 122..460 | 98 | <- | Minus |
| arm_3L | 16124596..16124680 | 37..121 | 100 | -> | Minus |
