FMO03869.5prime Sequence
1205 bp (1035 high quality bases) assembled on 2008-07-21
> FMO03869.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTGCTTAAGATTC
TCCTAGTCGTAGGACTCTTTGGGCTGGCTAGGTCCGTTGAGCAAGTGCGA
TATGATAACTACAAGGTATACAATGTGAGGATCGATGATCTGGAGCAGTT
TAAGCTGCTTCACACGCAGGAGAGGTCCTTGAAGCTCAGCAGTTGGCGTG
AGGCTCGTCACTTGGGTGAATCCTCCGATATAATGCTGCCTCCTGAATAT
CAGAAGACATTTGAAAGCCTCTTGACCAAACACAATTTCACCTATAACCT
GAAGATCGATAATGTCCAGACCCACATCGATGCCCAGAGACCCAAACAAC
GCATTACTTCCATGGAATGGACACAGTTTCACACTCTGGAAGAGATATAC
GCCTGGTTGGATGTGATCGAGGATCGTTATCCGGATATAGTCACACCCTT
TACCATCGGCAACTCATACGAGGGCAGACCGATTAGAGGTGTTAAAATTT
CATACAAAGAGGGAAATCCCGCCGTTTTCATAGAGTCCAATATTCATGCC
CGCGAATGGATTACGTCAGCGACGATCACCTATTTCATCGATGAGTTGCT
GGTGCCTCGTAACCCGGCAGTCAGGGATATAGCTCAGAATGTGGACTGGT
ATATCATTCCCGTTCTAAATACAGATGGCTTTGCTTATTCCCATGAAGTG
GAACGTCTTTGGCGAAAGTCCCGCCTGCCTTCAGATCCCACGGGGGAGTG
CATTGGAACTGATCTCAATAGGAACTTTGATTACCTGTGGATGTTGACTG
GAGCCGAATCGGATCCCTGTTCACAATTATATGCTGGTCCCTCACCAGAA
TCAGATCCCGAGATCAGTCAACTAACCGCCTACATAAACAACTCCATACC
TGAAGCACTAATAAAGATTTATATCTCATTGCATTCCTATTGGACAAGTA
TGTTCTTTCGCTTGGGGACACACAGCTCTAGAGTCCCCGAACACTATCCA
CAAATTGATGCACGTAGCCAAGGGCTTCTCGGATGCTCTATATAGAAGAT
ATGGCACAGTATTAACTATGGATCAGTGCTACAAACATTATATGAGGTAT
CTGTCGGCAGATGGCCCTATGGCGGTGAAGAACCTAGATACCTAACCTAG
CTGCCGATAGTCAATTGGCTGTCTCTCTCGGAGTATTTATTCCCGTGGCA
CCCAA
FMO03869.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14820-RA | 1430 | CG14820-RA | 35..1138 | 35..1133 | 5085 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6933166..6933684 | 183..701 | 2580 | 99.8 | Plus |
| 3L | 28110227 | 3L | 6934070..6934337 | 795..1063 | 1030 | 96.3 | Plus |
| 3L | 28110227 | 3L | 6932960..6933109 | 35..184 | 750 | 100 | Plus |
| 3L | 28110227 | 3L | 6933882..6933976 | 700..794 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:48 has no hits.
FMO03869.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:01:35 Download gff for
FMO03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14820-RA | 26..1156 | 24..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:31:26 Download gff for
FMO03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14820-RA | 22..1152 | 24..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:35 Download gff for
FMO03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14820-RA | 26..1156 | 24..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:35 Download gff for
FMO03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6932951..6933109 | 24..184 | 96 | -> | Plus |
| 3L | 6933168..6933683 | 185..700 | 99 | -> | Plus |
| 3L | 6933883..6933976 | 701..794 | 100 | -> | Plus |
| 3L | 6934070..6934337 | 795..1063 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:01:35 Download gff for
FMO03869.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6926051..6926209 | 24..184 | 96 | -> | Plus |
| arm_3L | 6926268..6926783 | 185..700 | 99 | -> | Plus |
| arm_3L | 6926983..6927076 | 701..794 | 100 | -> | Plus |
| arm_3L | 6927170..6927437 | 795..1063 | 97 | == | Plus |
