FMO03872.5prime Sequence
1240 bp (1056 high quality bases) assembled on 2008-07-21
> FMO03872.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGAGTCCC
AGAACGCGACGGGTGCTCCAGGAACTGAAACCCCAGGATGAGAACTCGAA
ATGCTTCGAGTGCGGTACCCACAATCCGCAGTGGGTGTCCGTGACCTACG
GCATCTGGATCTGCCTGGAGTGCTCCGGCAAGCATCGCAGTCTGGGCGTG
CATCTGTCCTTCGTGCGCTCCGTCACTATGGATAAGTGGAAGGACATCGA
GCTGGAGAAGATGAAGGCGGGCGGCAATCGCAATGCGCGCGAGTTTCTGG
AGGATCAGGAGGACTGGAACGAACGGGCGCCTATCACGCAGCGTTACAAC
TCGAAGGCGGCTGCTTTGTACCGCGATAAGATAGCCACCTTGGCCCAGGG
CAAGAGCTGGGATCTCAAGGAGGCGCAAGGCCGCGTGGGCAGCAACAATA
GCTTCAGCTCAGGTGGCTCCAGCAACAGCAGCTACCAGTCGCGACCCAGT
GCAACAGGTTATGGCGGAAACGGAGGCTATCAGAATGGCGGAGGCGCCGA
GCCTGGAGGCTATCAGCAGTACCAAACGCAGGAGTTCAAGGACCAGAAGG
AGGAGTTCTTCAGCCGACGCCAAGTGGAGAATGCCTCCAGGCCAGAAAAC
TTGCCACCGAGTCAGGGCGGAAAATATGCAGGTTTCGGGTTCACACGCGA
ACCACCACCGAAAACGCAATCTCAGGAGCTTTTCGACTCGACGCTTTCCA
CTTTGGCCTCTGGCTGGAGCCTTTTCTCCACCAACGCCTCCAAGTTGGCC
AGCACCGCCAAGGAGAAAGCCGTCACCACCGTCAATTTGGCCTCGACAAG
ATTAAAGAGGGAACTCTGCTAGATTCCGTACAATGCGGAGTTACCGATGT
AGCCAGCAAGGTCACCGATATGGGCAAACGAGGTTGGAATAATCTGGCGG
GCAGCAACATTTCGTCGCCGCAGGCGGATACAACGATCCCAACTTCGAGG
AAAGCAGCGCCTACCAGCGTTCCATTCCGTGGGCGTAATCTGGCCGGAGC
TTGGGTCAGCAAAGCGGCGTCAGCGACAGCGACTGGGGGCGGCTGGCCAG
ACAACGCACAGCCAGGTCGCACCTTGACCAGCCTCGAGTCGTAACCACAA
TCAGGTGAATAGAAGCAGCGGGCGCATACGCCTCCGCTGCCTAACTCTGA
CCTAACTGTTCCGCTTCCGAGGCGACACAACATTACGAGA
FMO03872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ArfGAP1-RA | 2085 | CG4237-RA | 361..1564 | 31..1226 | 5250 | 96.7 | Plus |
| ArfGAP1-RB | 2025 | CG4237-RB | 361..1179 | 31..849 | 4050 | 99.6 | Plus |
| ArfGAP1-RB | 2025 | CG4237-RB | 1179..1504 | 908..1226 | 930 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12416540..12417092 | 646..94 | 2750 | 99.8 | Minus |
| 3L | 28110227 | 3L | 12416277..12416479 | 849..647 | 1000 | 99.5 | Minus |
| 3L | 28110227 | 3L | 12415671..12415871 | 1106..909 | 700 | 95.5 | Minus |
| 3L | 28110227 | 3L | 12415942..12416006 | 913..849 | 325 | 100 | Minus |
| 3L | 28110227 | 3L | 12417153..12417220 | 98..31 | 310 | 97.1 | Minus |
Blast to na_te.dros performed 2014-11-28 19:30:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy10 | 6006 | gypsy10 GYPSY10 6006bp | 3794..3831 | 484..521 | 118 | 78.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1541..1589 | 439..487 | 110 | 69.4 | Plus |
FMO03872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:06 Download gff for
FMO03872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArfGAP1-RA | 355..1448 | 25..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:17:50 Download gff for
FMO03872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gap69C-RA | 478..1571 | 25..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:54 Download gff for
FMO03872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ArfGAP1-RA | 355..1448 | 25..1112 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:54 Download gff for
FMO03872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12415663..12415869 | 911..1112 | 94 | <- | Minus |
| 3L | 12415945..12416004 | 851..910 | 100 | <- | Minus |
| 3L | 12416275..12416479 | 647..850 | 99 | <- | Minus |
| 3L | 12416540..12417087 | 99..646 | 100 | <- | Minus |
| 3L | 12417153..12417217 | 34..98 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:06 Download gff for
FMO03872.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12409375..12409579 | 647..850 | 99 | <- | Minus |
| arm_3L | 12408763..12408969 | 911..1112 | 94 | <- | Minus |
| arm_3L | 12409045..12409104 | 851..910 | 100 | <- | Minus |
| arm_3L | 12409640..12410187 | 99..646 | 100 | <- | Minus |
| arm_3L | 12410253..12410317 | 34..98 | 96 | <- | Minus |
