FMO03873.5prime Sequence
1210 bp (1046 high quality bases) assembled on 2008-07-21
> FMO03873.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTCACTCTGCC
GCTCAGTGTTGCACAAACAGCTGCACTTTGGGCGAAGATTTTCTCTCGAC
TCGCCATAAAAAAAATGATGGAACTGCACGCAAATGACGTTGACCTGGAG
GACGGCGAGCTATCGGAGAGCGACGATGATGGCGTTTACACGCCGTTGCA
GCGACCTGACGGTGCGGAGAAGGTGGCCAGTCCCCTTACCACCTGCCATC
AGATCCAGACTGCGTTAGAGGACGAGTCACAAAGCAACAGCGACTCCTCG
ACTGCCGAATCCTCCGAGGACGGGTGCATCAAGAAGCTTCGTACGGAATC
CACCGGACCCGACGGCCACAAGAAGCGGAAAAAGCGCATTCGGCGCACGG
TAATGCGGCGCGTTCCGCCCACGGATGCTGAAATGCAACCGAATCGAGCC
CGTTTCAAGAAGTACAACGTGTGGGCTTCTGCCCTGCAAGAGGATGCGCT
CAGCGAGAATATGCGTGGCTGCGACGTTACCCGAAGCGGTCGGGATCGAA
ATGTTGAAAACTACGACTTCTCATTGCGATACCGGCTGAACGGCGAGAAC
ACTCTAAAGCGACGACTCTCAAACTCTTCGGAGGACGGCGGCGAATGCTC
CCATCCAGCTCACAAGAGGGGAAGACCTTCTAGTCGGCCCATCACCGGGA
ATCAACAGCGCGGTTTGGTCAAGAGTAGAACGGGTCACCGGTCACGTCGT
GGGACATCTTCGGCCAGCGGATCTTCCGATTTCTGCGAGCCCAGACACAT
TCTGGACTTAAACGAAGTGGGGTGAGAGAGATCCTTCGGATGTGGCTACC
GAAATGGCCAGCAACTGTACGAGGAAAAGGACGAATTACTTGTTCGAGTC
GTGGAGGTTCTTGGCATAGATGTGTGCCTAGAAGCTATACAGGAAACTCA
GCGCATTGAAGCCGATGGCGGCATGATGATCAAAACGGCATACGGAGACG
TACACCAGCGGGGTATTCCTGTTCTATAAAGCCACCACGATAACATCCAC
TCAGAGCAGCAGAAGCGCATTTTAGTGAGGATCGCCAGAGTCTGGACCAG
TCCCGAAACCAATCGAAACGTGATGCCGACCGTAGTGGAAGATTGAGATG
GCTCACAGCCAGTACGACCTTGCCACTTAATATCCAGCGCAGAGAGCATC
TCACGGTGCC
FMO03873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phax-RA | 1533 | CG8069-RA | 1..1111 | 41..1142 | 5070 | 97.9 | Plus |
| Phax-RB | 1591 | CG8069-RB | 176..1169 | 158..1142 | 4485 | 97.7 | Plus |
| Phax-RB | 1591 | CG8069-RB | 1..119 | 41..159 | 595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9114449..9115183 | 158..892 | 3580 | 99.7 | Plus |
| 2R | 25286936 | 2R | 9114270..9114392 | 37..159 | 615 | 100 | Plus |
| 2R | 25286936 | 2R | 9115238..9115330 | 892..984 | 370 | 97.9 | Plus |
| 2R | 25286936 | 2R | 9115384..9115525 | 984..1121 | 285 | 86.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:00 has no hits.
FMO03873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:41 Download gff for
FMO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phax-RA | 1..1075 | 41..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:21:40 Download gff for
FMO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phax-RA | 1..1086 | 30..1111 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:39 Download gff for
FMO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phax-RA | 1..1075 | 41..1111 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:39 Download gff for
FMO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9114261..9114392 | 28..159 | 96 | -> | Plus |
| 2R | 9114451..9115183 | 160..892 | 99 | -> | Plus |
| 2R | 9115239..9115330 | 893..983 | 96 | -> | Plus |
| 2R | 9115384..9115497 | 984..1094 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:41 Download gff for
FMO03873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5001766..5001897 | 28..159 | 96 | -> | Plus |
| arm_2R | 5001956..5002688 | 160..892 | 99 | -> | Plus |
| arm_2R | 5002744..5002835 | 893..983 | 96 | -> | Plus |
| arm_2R | 5002889..5003002 | 984..1094 | 93 | == | Plus |
