FMO03874.5prime Sequence
777 bp (777 high quality bases) assembled on 2008-07-21
> FMO03874.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCGCGTCCTTAT
TGCTCTGTGCCTTGTGGCTGCCGTTAGTGCCAGAAGTGGCTATAACTACC
AGCCTGCAGCTTCTGCCCCAGCTGTCGCATCCTTTGCTCCTTCCGGACCC
AGTTACTCTCCTTCCGTGGCCGCTAGCCAGGATGCCCCCGCCGAGACCTA
TGCACCTGCTTCTGCCCCCGAAGCTGCTCCTTCCGCGGTTGCCACCAACT
ATGCGGCTCCCCAGGCCGAGCTCCAAAAGGAGTTCTTCACGTACACCGCT
GATGAGCAGGACTTCGTTGAACCAGCTGGCTCTCAGCAGGTATCCGCCTC
CTTGAACAAGGCCCTGCGTGTGATCTTCATCAAGGGACCCGAGAACACTG
GCCTGGAGAACGCTGCTGTGGCTCTGGCCAAGCAGGCTGGACAGCAGGAG
ACCGCCATCTATGTCCTGAACAAGCAGGCTGATATCGGAGATCTGAGCAA
CAAGCTGAACTCTATCCGCAACAACAACAACAACAAGCCCGAGGTGCACT
TCGTGAAATACCGCACCAACCAGGATGCCCTCAACGCCCAGCAGGCCATC
CAGTCGCAGTACGATCAGCTGGGAGGATCCTCCACCATTCTGAACGGAGG
TGTGGCTCCCGTCCTGAACTTCGCATCTCAGCCAGCTGCCCAGCAAGTGG
CCGCTCCCTCGGCTCCTGGTAGCTCCTACCTGCCCGCTTCGGTCCTCCGT
TTTCGCCAAGCAAGCTTTCTAGACCAT
FMO03874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlH-RA | 920 | CG31080-RA | 63..785 | 37..759 | 3615 | 100 | Plus |
| TwdlJ-RB | 908 | CG5471-RB | 258..655 | 232..629 | 955 | 83 | Plus |
| TwdlM-RA | 1030 | CG5468-RA | 425..834 | 265..674 | 950 | 82.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26633872..26634579 | 52..759 | 3540 | 100 | Plus |
| 3R | 32079331 | 3R | 26630175..26630572 | 232..629 | 955 | 82.7 | Plus |
| 3R | 32079331 | 3R | 26628099..26628484 | 630..245 | 925 | 82.6 | Minus |
| 3R | 32079331 | 3R | 26619619..26620028 | 265..674 | 910 | 81.5 | Plus |
| 3R | 32079331 | 3R | 26624766..26625172 | 674..268 | 865 | 80.8 | Minus |
| 3R | 32079331 | 3R | 26622698..26623062 | 632..268 | 850 | 82.2 | Minus |
| 3R | 32079331 | 3R | 26632360..26632724 | 268..632 | 835 | 81.9 | Plus |
| 3R | 32079331 | 3R | 26626167..26626453 | 630..344 | 520 | 78.7 | Minus |
| 3R | 32079331 | 3R | 26656933..26657251 | 353..671 | 305 | 73 | Plus |
| 3R | 32079331 | 3R | 26620800..26621057 | 630..373 | 270 | 73.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:07 has no hits.
FMO03874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:07 Download gff for
FMO03874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlH-RA | 58..790 | 32..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:23:43 Download gff for
FMO03874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlH-RA | 56..788 | 32..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:09 Download gff for
FMO03874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlH-RA | 58..790 | 32..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:09 Download gff for
FMO03874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26633872..26634584 | 52..765 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:07 Download gff for
FMO03874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22459594..22460306 | 52..765 | 99 | | Plus |
