FMO03879.5prime Sequence
1071 bp (1032 high quality bases) assembled on 2008-07-21
> FMO03879.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAGGCTAAGTTTT
GTGATTACTCTTATCCTGACAGGTTCCCGACTGTCCAACGCTTTCTGGTG
GCCAAAGACAACAACGGAAACCAGGGAGCCGAGTGGCGGCCAAATCCTCC
AGCAAATTCCGCTCACCTATTTCCGCACATACACTTATCAGCCATTAGCT
CCTGGGTTTTTTGGATTTGGAGCTGCTCAGACGCCTATGCTGCCTGGTGC
TCAGTACGATCCATATGGGATGACCAGTTACGCTGCTGGCAGACGACATG
ACTCCGTTTCCAGGCAAGAAGTTACTGCTCCGACGGACTTGAGCAACGCG
CCGAGTAGCTCTCGGACAACCAGCACCACTCCCGCGCCAACGACAACAAC
TACCACCACCACAACCACCACTCCGGCACCAACAACAAGACCTAGTACTA
CTACCACCAGTACAACCCCACCACCAGTACCACCTCCGCCCCAGTCCACC
AGTAGTAGTTTCTCCGAAGGACCCACTTCTAGCTTGCTGCGCTTTGGTGA
ATATCCCGCGTACAATCGCCGGGTAAACAACCTCTATAACGCCAGGCCTC
AGTATCCATATCCGGATTACTTCAACTATCAGCCGCAGCAGCAGACCGTA
GTATCGGAGCAAGGGGTCTCCAGTAACAGTCGCATTCAATTTGTTCCCTG
CATGTGCCCGGTCAGTATGCCCAGTTTCGTCTCATCCTCGACAGCGGCCA
CATTGCCTTCGCAGCTGTCCACTTCCTCCACATCGTTCGTGTCCCAGCCG
GCGGCTCGTCACATCGAGGGACAGGAATTGGAAGCGGAAGTTGATGGCGA
GACAGATAACGAGGGAGAGGAAGAGGACGAGGATGAGGAACAGGGGCAGG
GCAAGGAACAGGATCAGGGCCAGAGCCCAGAGTCACAGTCTGGAAAGGCA
TTGCCATCAAGCCCCAGACAGAAAGACAGGATATTAACCTATCATGCAGT
CCTGTCGCAAGCTTTCTAAACCCATTCGTTTGGCCGCGCCGGGCCCAGGT
AAGGTGGTTCAATAAATCATA
FMO03879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13362-RA | 1686 | CG13362-RA | 133..1098 | 36..1006 | 4655 | 99 | Plus |
| CG5254-RB | 1362 | CG5254-RB | 1..427 | 483..53 | 1940 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 749848..750714 | 984..116 | 4200 | 99.4 | Minus |
| X | 23542271 | X | 750772..750835 | 116..53 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:20 has no hits.
FMO03879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:25 Download gff for
FMO03879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13362-RA | 126..1098 | 28..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:15:51 Download gff for
FMO03879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13362-RA | 122..1094 | 28..1006 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:53 Download gff for
FMO03879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13362-RA | 126..1098 | 28..1006 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:53 Download gff for
FMO03879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 749832..750714 | 116..1003 | 98 | <- | Minus |
| X | 750773..750834 | 54..115 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:25 Download gff for
FMO03879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 643865..644747 | 116..1003 | 98 | <- | Minus |
| arm_X | 644806..644867 | 54..115 | 100 | <- | Minus |
