FMO03882.5prime Sequence
623 bp (623 high quality bases) assembled on 2008-07-21
> FMO03882.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGAAAGCAAAAT
AGTAAACTAAAACCAGAAGTTTTGGAGGATCTCAAGCAAAACACAGAGTT
CACAGACGCTGAGATTCAAGAATGGTATAAAGGCTTTCTTAAGGACTGCC
CTAGTGGGCATTTATCAGTAGAAGAGTTTAAAAAGATTTATGGGAACTTT
TTCCCATATGGTGACGCTAGCAAGTTTGCAGAGCATGTCTTCCGGACATT
CGACGCCAACGGCGATGGCACTATAGACTTTAGAGAGTTCTTGTGTGCAC
TAAGTGTCACATCGCGGGGCAAACTCGAGCAGAAACTCAAATGGGCATTC
TCAATGTACGATCTTGATGGGAACGGATACATATCGCGGCAGGAAATGCT
AGAAATTGTTACAGCAATATATAAAATGGTCGGCTCGGTGATGAAAATGC
CAGAGGACGAGAGTACTCCTGAGAAACGAACCGACAAGATTTTTCGTCAA
ATGGATCGAAACAAGGATGGGAAATTAAGCTTGGAAGAGTTCATAGAAGG
AGCCAAAAGTGATCCATCAATAGTACGATTATTACAGTGTGATCCACAGT
CTCATGCAAGCTTTCTAGACCAT
FMO03882.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nca-RA | 899 | CG7641-RA | 245..814 | 36..605 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19997029..19997220 | 223..414 | 960 | 100 | Plus |
3L | 28110227 | 3L | 19997292..19997483 | 414..605 | 960 | 100 | Plus |
3L | 28110227 | 3L | 19996848..19996968 | 104..224 | 605 | 100 | Plus |
3L | 28110227 | 3L | 19996711..19996780 | 36..105 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:48 has no hits.
FMO03882.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:13 Download gff for
FMO03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 236..820 | 27..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:42 Download gff for
FMO03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 200..784 | 27..613 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:03 Download gff for
FMO03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nca-RA | 236..820 | 27..613 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:03 Download gff for
FMO03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19996702..19996780 | 27..105 | 95 | -> | Plus |
3L | 19996850..19996968 | 106..224 | 100 | -> | Plus |
3L | 19997031..19997219 | 225..413 | 100 | -> | Plus |
3L | 19997292..19997489 | 414..613 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:13 Download gff for
FMO03882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19989802..19989880 | 27..105 | 95 | -> | Plus |
arm_3L | 19989950..19990068 | 106..224 | 100 | -> | Plus |
arm_3L | 19990131..19990319 | 225..413 | 100 | -> | Plus |
arm_3L | 19990392..19990589 | 414..613 | 98 | | Plus |