Clone FMO03882 Report

Search the DGRC for FMO03882

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:38
Well:82
Vector:pMK33-CFH-BD
Associated Gene/TranscriptNca-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO03882.5prime Sequence

623 bp (623 high quality bases) assembled on 2008-07-21

> FMO03882.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGAAAGCAAAAT
AGTAAACTAAAACCAGAAGTTTTGGAGGATCTCAAGCAAAACACAGAGTT
CACAGACGCTGAGATTCAAGAATGGTATAAAGGCTTTCTTAAGGACTGCC
CTAGTGGGCATTTATCAGTAGAAGAGTTTAAAAAGATTTATGGGAACTTT
TTCCCATATGGTGACGCTAGCAAGTTTGCAGAGCATGTCTTCCGGACATT
CGACGCCAACGGCGATGGCACTATAGACTTTAGAGAGTTCTTGTGTGCAC
TAAGTGTCACATCGCGGGGCAAACTCGAGCAGAAACTCAAATGGGCATTC
TCAATGTACGATCTTGATGGGAACGGATACATATCGCGGCAGGAAATGCT
AGAAATTGTTACAGCAATATATAAAATGGTCGGCTCGGTGATGAAAATGC
CAGAGGACGAGAGTACTCCTGAGAAACGAACCGACAAGATTTTTCGTCAA
ATGGATCGAAACAAGGATGGGAAATTAAGCTTGGAAGAGTTCATAGAAGG
AGCCAAAAGTGATCCATCAATAGTACGATTATTACAGTGTGATCCACAGT
CTCATGCAAGCTTTCTAGACCAT

FMO03882.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
Nca-RA 899 CG7641-RA 245..814 36..605 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19997029..19997220 223..414 960 100 Plus
3L 28110227 3L 19997292..19997483 414..605 960 100 Plus
3L 28110227 3L 19996848..19996968 104..224 605 100 Plus
3L 28110227 3L 19996711..19996780 36..105 350 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:05:48 has no hits.

FMO03882.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:02:13 Download gff for FMO03882.5prime
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 236..820 27..613 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:32:42 Download gff for FMO03882.5prime
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 200..784 27..613 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:03 Download gff for FMO03882.5prime
Subject Subject Range Query Range Percent Splice Strand
Nca-RA 236..820 27..613 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:03 Download gff for FMO03882.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19996702..19996780 27..105 95 -> Plus
3L 19996850..19996968 106..224 100 -> Plus
3L 19997031..19997219 225..413 100 -> Plus
3L 19997292..19997489 414..613 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:02:13 Download gff for FMO03882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19989802..19989880 27..105 95 -> Plus
arm_3L 19989950..19990068 106..224 100 -> Plus
arm_3L 19990131..19990319 225..413 100 -> Plus
arm_3L 19990392..19990589 414..613 98   Plus